LOCUS AK073901 3187 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033071K16, full insert
sequence.
ACCESSION AK073901
VERSION AK073901.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3187)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3187
/clone="J033071K16"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..3187
/db_xref="Osa1:LOC_Os05g36960"
/db_xref="RAP-DB:Os05g0440800"
/note="(RAP Annotation release2) Protein kinase-like
domain containing protein"
/note="(Rice Genome Annotation Project) ATP binding
protein, putative, expressed"
/note="mapping to R05-TIGRv4S1-000721F (Chr.5: short
arm=21504630, long arm=21510232, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 910 a 685 c 748 g 844 t
ORIGIN
1 ggttttcgat gcctttgcag aaatcgcctt ggtgcagtgg agtggaggtg tatgaggtcg
61 cgctcggcca gtaggaatga gattggtctg ggtatctagg gtggacttgc tgctgtgaag
121 ctgtgattgt tctgttaggg atttggggca catggagtcg cggatggatc agtacgagat
181 catggagcag gttggccggg gcgcctttgg tgctgcaatc cttgtgaatc ataagattga
241 gaggaagaag tatgtgttga agaaaatccg gcttgcgagg cagacagagc gttgccgcaa
301 gtctgctcac caagagatgg ctctgattgc tcggttgcaa cacccttaca ttgttgaatt
361 caaagaggct tgggttgaga agggttgcta tgtctgcatt gtcacgggct attgtgaaga
421 tggagatatg gatgaattga tgaagaaatt aaatggtact tacttcccag aggagaaatt
481 gctgaaatgg tttgctcaac tggtattagc cgtggactat ttgcattcga actatgtctt
541 gcatcgggac ctgaagtgct ccaacatatt tctcaccaaa gatcaagata tacgcctagg
601 agactttggg cttgctaaga ccttaaagga agatgattta acttcttcgg ttgttggaac
661 accgaattac atgtgtccag agcttctcac agatatccct tatggattca agtcagacat
721 ctggtctctt gggtgctgta tgtatgagat ggcagctcat cggcctgcct tcaaggcttt
781 tgatatggct ggattaataa gtaagataaa taggtcctcc attggcccct tgcctgcctg
841 ttactcttct tctatgaaaa ctcttatcaa aagcatgttg agaaaaagtc ctgagcatcg
901 acctactgca tctgagattc tgaagaatcc gtatctccaa ccttatgtta atcaatgccg
961 ccctctttct gatgctccaa ctcccatacg catgccagag aatccattat ccacttcacg
1021 gagtaatcag agatgcacgt ctgagagcca aagcagtagc atttcttgta gtgatatcga
1081 cagtacacaa tcaagtgaca gaagcacatc agggggcgct cctagcactg acagcaagct
1141 taacgatatc agaagcatcc aagatgcaga ccgagctgat tcagacgaaa aatgtgtaac
1201 accagaagat cttagaggca acaagaacat ttctggtgct gaactgaaaa gacaagattc
1261 ctcaaaaagt gtacatcagc atcacagggg tgagagtaag cagccaaaaa taattgagaa
1321 gataatgaca actcttagag aggagagtag gcttagagaa aacaattctc ctgtaagttc
1381 tagtggtgta aagttgactt ctgcagttag caataagaat caagcagagc aatcatcaga
1441 gagctcaagg cctcacagtg gtgtttcata cagttcaaag tttggtgaca tttcatctaa
1501 tggatggacc aatacaagcg atgaatgtgt agatccagtc caggtgccat tgcaattgaa
1561 acaactgtca ccaactgttg agcattgtcc aaagttaaaa aattccgggt cctcaactcc
1621 tgaacctgcc aaacagattg cagaaaatgg ttcctcagct tcaggaatga gtaaaaccaa
1681 gtcgtcacct agttctagta gacggcctag tcctcagaga caaacagtag caggaattcc
1741 aatcgtgcca ttcactgtgt caaaacgagc tcatatcaag gcagagagtg agaaaacacc
1801 gccgcgacct gcccatagcc caaataattc tctacataat ctccctcctt tgataccgat
1861 atctacaaat ctgtcagaag agaacatcaa gctgggtaat tctcaggcaa tgccagctcc
1921 tctggaattc gtgactgcag catccaagga ggacatcagc ttttactcaa attctgtagt
1981 tgattgtgtt gaaaaggccg agccatctga agtatttgaa tctaattctc cagcctacct
2041 gactccaccg tggacaggcc cagtgcttga tgccaaagga gagaatggcc taatagccat
2101 accatgttca gaaatacaca ctggcacatt gcagaagagt atggctagta atgatgattc
2161 aagcctgagc tctccgttgg atacatttta tcttagtttt gaacaagagt ttgtctgcaa
2221 ggatgattcg caatccagca agcatgggca cagtgctgtc acactactaa gtggtgagga
2281 caaatttact gtccaagaac ttcttgcatc aacaccagtt atttctcctt ttgtttcaag
2341 cacaagtaac actctgccag aggataaaag ttcttaccag tcattcaaga aacaatcaga
2401 ttcacattcg ggccctccag ttgatgttcc tgcacagact attagactca acagtttcct
2461 tgttagtgat gagtggccaa catcagaaac agttcaaggg gaagctcggg acacggctgc
2521 cagcaagctt ctgaatgtag taagagaaga ttttgatgta agaagcagtt catgctcaac
2581 aagcacgcaa ccttctggac aaaccccagt tagatccaaa ctcaacgtgc ctgaaactaa
2641 tcttgccagt aacatatcca taccatccat atcagaagca gtgagattat ctaccgccat
2701 ggacgttaaa ccgtacacgt ccgaggccag caatggagtc aaggaggagg catctcctgc
2761 caaggaagct cttgatgtta cgtcatttag gcagcgagct gaggctctag aaggtctctt
2821 ggagctttct gcggacttgc tggaaaacaa caggttggag gaactcgcca ttgttctaca
2881 gcctttcggg aagaacaagg tctccccgcg agagaccgca atttggttgg ccagaagttt
2941 caaaggaatg atgaacgaag aaggtggccg cctgtcgatg tgagtatctg taaccttaaa
3001 aggccttttt attgctttcc cctttgcttt tttgagtagc tcaaagtggg cttgatttgc
3061 tgacagcgtg ttgtgtttgt gttgcccggt tttgtttttt gtttcttttg attcaaacca
3121 ttctttttgg cgcatgttgt aaatagccaa gacttgtaaa cactaataaa atttgccttc
3181 agttccg
//