LOCUS AK073876 1644 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J033072L16, full insert sequence. ACCESSION AK073876 VERSION AK073876.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1644) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1644 /clone="J033072L16" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 191..1096 /db_xref="Osa1:LOC_Os07g48550" /db_xref="RAP-DB:Os07g0684800" /note="(RAP Annotation release2) Similar to NAM / CUC2-like protein" /note="(Rice Genome Annotation Project) NAC domain-containing protein 21/22, putative, expressed" /note="mapping to R07-TIGRv4S1-001017R (Chr.7: short arm=29038762, long arm=29040604, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG93687.1" /translation="MSESEVSVINQLEEEETRLELPPGFRFHPTDEEVVTHYLTRKAQ DRSFSCVVIADVNLNNCEPWDLPSKAKMGEKEWFFFCHKDRKYPTGMRTNRATASGYW KATGKDKEIFRGRGLLVGMKKTLVFYMGRAPRGEKTPWVMHEYRLDGKLPPNLPRSAK EEWAVCRVFNKDLAAKIAQMPPPPFPRNDSFDLDLDDFLHLDADLPPLIDDPFASTST LKTEPPPPANLMHNHYGYFSLPASATNYNHSSGAMADQAIRRFCKAEASTACFSGADA DVDPVVDELLSFPDSITDYSYIWKA" BASE COUNT 371 a 447 c 440 g 386 t ORIGIN 1 gcttcctaaa cccatctcga tccctaccta gctaagctat ttcattcaca cctcgatcaa 61 tctcgatcgt ctctctcgtc tactactagt actagcttct tctcctccat ttctgacctg 121 agctagctca gaacagagag ctgagaatca tcagctagct agctaggcgt ctggggagag 181 agcaggagcc atgtcggagt cggaggtgtc ggtgatcaac cagctggagg aggaggagac 241 tcggctggag ctgccgccgg ggttccggtt ccaccccacc gacgaggagg tggtgaccca 301 ctacctcacc cgcaaggccc aggaccggag cttctcctgc gtcgtcatcg ccgacgtgaa 361 cctcaacaac tgcgagccat gggacctccc aagcaaggcg aagatggggg agaaggagtg 421 gttcttcttc tgccacaagg accgcaagta cccgacgggg atgaggacga accgggcgac 481 ggccagcggg tactggaagg ccaccgggaa ggacaaggag atcttccgcg gccgcggcct 541 cctcgtcggc atgaagaaga cgctcgtctt ctacatgggc cgcgcccccc gcggcgagaa 601 gaccccctgg gtcatgcacg aataccgcct cgacggcaag cttcccccca acctcccccg 661 ctccgcaaag gaggaatggg cggtttgccg ggtgttcaac aaagacttgg cggcaaagat 721 tgcccaaatg ccgccgcctc ccttcccgcg caacgactcc ttcgacctcg acctcgacga 781 cttcctccac ctcgacgccg acctgccgcc gctcatcgac gaccccttcg cctccacctc 841 cacgctcaag acggagccac ctccgccggc caacctgatg cacaaccact acggctactt 901 ctccctcccg gcgtcagcga ccaattataa ccacagctcc ggcgccatgg cggaccaggc 961 gattcggagg ttctgcaagg cggaggcgtc gacggcgtgc ttctccggcg ccgacgctga 1021 cgtggatccg gtggtggacg agctgctctc cttcccggac tccatcacgg actactccta 1081 catatggaag gcctgaccag attaatttcg tggttaattt gccatatgat cgatcagatt 1141 aatcctgttt aattagttgg tttattaact tgattactgt caaaggtttg ggttaactag 1201 gagatgatga tgatggagtt tgtggtgatg cgagagagag agagattagg tcgcgctgat 1261 ctggtctgat caaggtgtgc agagcagatg gagcggacta attcattaat tagcttaatc 1321 aaattagtta tataggtttg tttgtcttaa ttctgtatgt atatagttat ctgattgggg 1381 ataatacata gagattacta gctagctagc tagtttggtg attagggggg tgatgagcta 1441 gctagagaga gatatctcat caaaattaag gtctcggttg gttgattaat ctgcagatta 1501 tatattgcct tgtgtgtgat aggccatgtg gcctctttct gtgtatgtgt gtgtgtggat 1561 ggaaggagta aattaactaa accccttgta catgtaccat cagttgtgct ttacttacat 1621 gatcaattca accattgatc gatt //