LOCUS AK073838 3783 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J033069J12, full insert sequence. ACCESSION AK073838 VERSION AK073838.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 3783) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..3783 /clone="J033069J12" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 79..3444 /db_xref="Osa1:LOC_Os01g52050" /note="(Rice Genome Annotation Project) systemin receptor SR160 precursor, putative, expressed" /note="mapping to R01-TIGRv4S1-001240R (Chr.1: short arm=30254474, long arm=30258256, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG93669.1" /translation="MDSLWAAIAALFVAAAVVVRGAAAADDAQLLEEFRQAVPNQAAL KGWSGGDGACRFPGAGCRNGRLTSLSLAGVPLNAEFRAVAATLLQLGSVEVLSLRGAN VSGALSAAGGARCGSKLQALDLSGNAALRGSVADVAALASACGGLKTLNLSGDAVGAA KVGGGGGPGFAGLDSLDLSNNKITDDSDLRWMVDAGVGAVRWLDLALNRISGVPEFTN CSGLQYLDLSGNLIVGEVPGGALSDCRGLKVLNLSFNHLAGVFPPDIAGLTSLNALNL SNNNFSGELPGEAFAKLQQLTALSLSFNHFNGSIPDTVASLPELQQLDLSSNTFSGTI PSSLCQDPNSKLHLLYLQNNYLTGGIPDAVSNCTSLVSLDLSLNYINGSIPASLGDLG NLQDLILWQNELEGEIPASLSRIQGLEHLILDYNGLTGSIPPELAKCTKLNWISLASN RLSGPIPSWLGKLSYLAILKLSNNSFSGPIPPELGDCQSLVWLDLNSNQLNGSIPKEL AKQSGKMNVGLIVGRPYVYLRNDELSSECRGKGSLLEFTSIRPDDLSRMPSKKLCNFT RMYVGSTEYTFNKNGSMIFLDLSYNQLDSAIPGELGDMFYLMIMNLGHNLLSGTIPSR LAEAKKLAVLDLSYNQLEGPIPNSFSALSLSEINLSNNQLNGTIPELGSLATFPKSQY ENNTGLCGFPLPPCDHSSPRSSNDHQSHRRQASMASSIAMGLLFSLFCIIVIIIAIGS KRRRLKNEEASTSRDIYIDSRSHSATMNSDWRQNLSGTNLLSINLAAFEKPLQNLTLA DLVEATNGFHIACQIGSGGFGDVYKAQLKDGKVVAIKKLIHVSGQGDREFTAEMETIG KIKHRNLVPLLGYCKAGEERLLVYDYMKFGSLEDVLHDRKKIGKKLNWEARRKIAVGA ARGLAFLHHNCIPHIIHRDMKSSNVLIDEQLEARVSDFGMARLMSVVDTHLSVSTLAG TPGYVPPEYYQSFRCTTKGDVYSYGVVLLELLTGKPPTDSADFGEDNNLVGWVKQHTK LKITDVFDPELLKEDPSVELELLEHLKIACACLDDRPSRRPTMLKVMAMFKEIQAGST VDSKTSSAAAGSIDEGGYGVLDMPLREAKEEKD" BASE COUNT 813 a 1051 c 1083 g 836 t ORIGIN 1 gactttctct ctctaccgcc gctctcgcag caggccaggt tctctctaat ggtcgtgagg 61 cagtgagctc gctcgtacat ggattccttg tgggcagcga tagcggcact gtttgtggcg 121 gcggcggtgg tggtgagggg ggcggcggcg gccgacgacg cccagctgct cgaggagttc 181 aggcaggcgg tgccgaacca ggcggcgctc aaggggtgga gcggcggcga cggcgcgtgc 241 aggttcccgg gggccgggtg ccggaacggg aggctcacgt cgctgtcgct cgccggcgtg 301 ccgctcaatg ccgagttccg cgccgtcgcg gccaccctgc tgcagctcgg cagcgtcgag 361 gtgctgagcc tccgcggcgc caacgtcagc ggcgcgctct cggcggctgg cggcgcgagg 421 tgcgggagca agctgcaggc gctcgatttg tccgggaatg ccgcgctccg gggctccgtc 481 gccgacgtgg cggccctggc cagcgcctgc ggcggcctca agacgctgaa tctctccggc 541 gatgcggttg gtgcggcgaa ggtcggtggc ggtggtggcc cgggctttgc cgggctggac 601 tcgcttgatt tgtccaacaa caagatcacc gacgatagcg acctccggtg gatggtggat 661 gccggagtcg gggcagtacg gtggttggac cttgccctga acaggatctc cggtgtcccg 721 gagttcacca actgctccgg gcttcagtac cttgacctct ccggcaacct catcgtcggt 781 gaggtgcccg gcggggcact ttccgactgc cgcggtctga aagtgctcaa cctctccttc 841 aaccacctcg ccggcgtgtt ccctccggac atcgccggcc tcacgtcgct caacgccctc 901 aacctctcca acaacaactt ctccggcgag ctccccggcg aggctttcgc aaagctgcag 961 cagcttacgg cgctctccct ctccttcaac cacttcaacg gctccatccc ggacaccgta 1021 gcctcgctgc cggagctcca gcagctcgac ctcagctcca acaccttctc cggcaccatc 1081 ccgtcgtccc tctgccaaga tcccaactcc aagctccatc tgctgtacct tcagaacaac 1141 tacctcaccg gcggcatccc agacgccgtc tccaactgca ccagcctcgt ctccctcgac 1201 ctcagcctca actacatcaa tgggtccatc ccggcatccc tcggcgacct tggcaacctg 1261 caggacctca tcctgtggca gaacgagctg gagggcgaga taccggcgtc cctgtcgcgc 1321 attcagggcc tcgagcatct catcctcgac tacaacgggc tcacgggtag catcccgccg 1381 gagctagcca agtgcaccaa gctgaactgg atttctttgg cgagcaaccg gctgtccggg 1441 ccaatccctt catggcttgg gaagctcagc tacttggcta tcttgaagct cagcaacaat 1501 tccttctcgg ggcctatacc gccagagctc ggtgactgcc agagcttggt gtggctggac 1561 ctgaatagca atcagctgaa tggatcaata cccaaagagc tggccaaaca gtctgggaag 1621 atgaatgttg gcctcatagt tggacggcct tacgtttatc ttcgcaacga cgagctgagc 1681 agcgagtgcc gtggcaaggg gagcttgctg gagtttacca gcatccgacc tgatgacctc 1741 agtcggatgc cgagcaagaa gctgtgcaac ttcacaagaa tgtatgtggg gagcacggag 1801 tacaccttca acaagaatgg ttcgatgata tttctcgatt tgtcatataa tcagctggac 1861 tcggcgattc ctggcgagct gggggacatg ttctacctca tgatcatgaa tcttgggcac 1921 aacctactgt caggtaccat cccatcgcgg ctagcagagg ccaagaagct tgcggtgctt 1981 gacctgtcgt ataaccagtt ggaagggcca atacccaact ctttctcggc actttccttg 2041 tcggagatca atctgtcaaa taatcagctg aatggaacaa ttccagagct tggttccctt 2101 gccacatttc cgaagagcca gtatgagaat aacactggtt tatgtggctt cccactgcca 2161 ccatgtgacc atagttcccc aagatcttcc aatgaccacc aatcccaccg gaggcaggca 2221 tcgatggcaa gcagtatcgc tatgggactg ttattctcac tgttctgtat aattgtgatc 2281 atcatagcca ttgggagcaa gcggcggagg ctgaagaatg aggaggcgag tacctctcgt 2341 gatatatata ttgatagcag gtcacattct gcaactatga attctgattg gaggcaaaat 2401 ctctccggta caaatcttct tagcatcaac ctggctgcat tcgagaagcc attgcagaat 2461 ctcaccctgg ctgatcttgt tgaggccaca aatggcttcc acatcgcatg ccaaattggg 2521 tctggtgggt ttggtgatgt ctacaaggca cagctcaagg atgggaaggt tgttgcaatc 2581 aagaagctaa tacatgtgag cgggcagggt gaccgggagt tcactgcaga aatggagacc 2641 attggcaaga tcaaacaccg taaccttgtt ccacttcttg gctattgcaa ggctggtgag 2701 gagcggttgt tggtgtatga ttacatgaag tttggcagct tggaggatgt gttgcatgac 2761 cgcaaaaaga tcggtaaaaa gctgaattgg gaggcaagac ggaaaatcgc tgttggagca 2821 gcaaggggtt tggcattcct ccaccacaat tgcattcctc acatcattca ccgagacatg 2881 aagtcgagca atgtgcttat cgatgaacaa ctggaagcaa gggtatctga tttcggtatg 2941 gcgaggctga tgagcgtggt ggatacacac cttagcgtgt ccactcttgc tggaacgcca 3001 gggtatgtac caccggagta ctaccagagc ttcagatgca ccaccaaggg tgatgtttat 3061 agctatggtg ttgtgttgct ggagctgctc accgggaaac cgccgacgga ctcggcagac 3121 tttggcgagg acaataacct tgtggggtgg gtcaagcagc acaccaaatt gaagatcacg 3181 gatgtcttcg accctgagct actcaaggag gatccatccg tcgagcttga gctgctggag 3241 catttgaaaa tcgcctgtgc gtgcttggat gaccggccgt cgaggcggcc gacgatgctg 3301 aaggtgatgg caatgttcaa ggagatccaa gctgggtcga cggtcgactc gaagacctcg 3361 tcggcggcag cgggctcgat cgatgaggga ggctatgggg tccttgacat gcccctcagg 3421 gaagccaagg aggagaagga ttagaaacaa caaccaccga cacacaggag aaacagccgg 3481 cggtgagtgg ccaccaacga ggccagtcgg cggcgaaatg cccgtagaaa caacagtcat 3541 tcagaatcag atggatgcca ttttgaactc tccacacaag cttagcaatc gcttctgatg 3601 gtgctacaag ataagaattt tccagctgta ggttgatcag tcgaagttgt tatgtaccta 3661 taggagtaga tcttttcttc tttctttttt cgcagctttc ttcgtctccc tgtttgtttt 3721 tcccgtcgcg tcgcagtaag agctgtgtat gtacatatat aaatgttgaa ttttctttgg 3781 cgc //