LOCUS       AK073838                3783 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:J033069J12, full insert
            sequence.
ACCESSION   AK073838
VERSION     AK073838.1
KEYWORDS    CAP trapper; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 3783)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..3783
                     /clone="J033069J12"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     CDS             79..3444
                     /db_xref="Osa1:LOC_Os01g52050"
                     /note="(Rice Genome Annotation Project) systemin receptor
                     SR160 precursor, putative, expressed"
                     /note="mapping to R01-TIGRv4S1-001240R (Chr.1: short
                     arm=30254474, long arm=30258256, direction=reverse) for
                     TIGR Pseudomol ver4"
                     /protein_id="BAG93669.1"
                     /translation="MDSLWAAIAALFVAAAVVVRGAAAADDAQLLEEFRQAVPNQAAL
                     KGWSGGDGACRFPGAGCRNGRLTSLSLAGVPLNAEFRAVAATLLQLGSVEVLSLRGAN
                     VSGALSAAGGARCGSKLQALDLSGNAALRGSVADVAALASACGGLKTLNLSGDAVGAA
                     KVGGGGGPGFAGLDSLDLSNNKITDDSDLRWMVDAGVGAVRWLDLALNRISGVPEFTN
                     CSGLQYLDLSGNLIVGEVPGGALSDCRGLKVLNLSFNHLAGVFPPDIAGLTSLNALNL
                     SNNNFSGELPGEAFAKLQQLTALSLSFNHFNGSIPDTVASLPELQQLDLSSNTFSGTI
                     PSSLCQDPNSKLHLLYLQNNYLTGGIPDAVSNCTSLVSLDLSLNYINGSIPASLGDLG
                     NLQDLILWQNELEGEIPASLSRIQGLEHLILDYNGLTGSIPPELAKCTKLNWISLASN
                     RLSGPIPSWLGKLSYLAILKLSNNSFSGPIPPELGDCQSLVWLDLNSNQLNGSIPKEL
                     AKQSGKMNVGLIVGRPYVYLRNDELSSECRGKGSLLEFTSIRPDDLSRMPSKKLCNFT
                     RMYVGSTEYTFNKNGSMIFLDLSYNQLDSAIPGELGDMFYLMIMNLGHNLLSGTIPSR
                     LAEAKKLAVLDLSYNQLEGPIPNSFSALSLSEINLSNNQLNGTIPELGSLATFPKSQY
                     ENNTGLCGFPLPPCDHSSPRSSNDHQSHRRQASMASSIAMGLLFSLFCIIVIIIAIGS
                     KRRRLKNEEASTSRDIYIDSRSHSATMNSDWRQNLSGTNLLSINLAAFEKPLQNLTLA
                     DLVEATNGFHIACQIGSGGFGDVYKAQLKDGKVVAIKKLIHVSGQGDREFTAEMETIG
                     KIKHRNLVPLLGYCKAGEERLLVYDYMKFGSLEDVLHDRKKIGKKLNWEARRKIAVGA
                     ARGLAFLHHNCIPHIIHRDMKSSNVLIDEQLEARVSDFGMARLMSVVDTHLSVSTLAG
                     TPGYVPPEYYQSFRCTTKGDVYSYGVVLLELLTGKPPTDSADFGEDNNLVGWVKQHTK
                     LKITDVFDPELLKEDPSVELELLEHLKIACACLDDRPSRRPTMLKVMAMFKEIQAGST
                     VDSKTSSAAAGSIDEGGYGVLDMPLREAKEEKD"
BASE COUNT          813 a         1051 c         1083 g          836 t
ORIGIN      
        1 gactttctct ctctaccgcc gctctcgcag caggccaggt tctctctaat ggtcgtgagg
       61 cagtgagctc gctcgtacat ggattccttg tgggcagcga tagcggcact gtttgtggcg
      121 gcggcggtgg tggtgagggg ggcggcggcg gccgacgacg cccagctgct cgaggagttc
      181 aggcaggcgg tgccgaacca ggcggcgctc aaggggtgga gcggcggcga cggcgcgtgc
      241 aggttcccgg gggccgggtg ccggaacggg aggctcacgt cgctgtcgct cgccggcgtg
      301 ccgctcaatg ccgagttccg cgccgtcgcg gccaccctgc tgcagctcgg cagcgtcgag
      361 gtgctgagcc tccgcggcgc caacgtcagc ggcgcgctct cggcggctgg cggcgcgagg
      421 tgcgggagca agctgcaggc gctcgatttg tccgggaatg ccgcgctccg gggctccgtc
      481 gccgacgtgg cggccctggc cagcgcctgc ggcggcctca agacgctgaa tctctccggc
      541 gatgcggttg gtgcggcgaa ggtcggtggc ggtggtggcc cgggctttgc cgggctggac
      601 tcgcttgatt tgtccaacaa caagatcacc gacgatagcg acctccggtg gatggtggat
      661 gccggagtcg gggcagtacg gtggttggac cttgccctga acaggatctc cggtgtcccg
      721 gagttcacca actgctccgg gcttcagtac cttgacctct ccggcaacct catcgtcggt
      781 gaggtgcccg gcggggcact ttccgactgc cgcggtctga aagtgctcaa cctctccttc
      841 aaccacctcg ccggcgtgtt ccctccggac atcgccggcc tcacgtcgct caacgccctc
      901 aacctctcca acaacaactt ctccggcgag ctccccggcg aggctttcgc aaagctgcag
      961 cagcttacgg cgctctccct ctccttcaac cacttcaacg gctccatccc ggacaccgta
     1021 gcctcgctgc cggagctcca gcagctcgac ctcagctcca acaccttctc cggcaccatc
     1081 ccgtcgtccc tctgccaaga tcccaactcc aagctccatc tgctgtacct tcagaacaac
     1141 tacctcaccg gcggcatccc agacgccgtc tccaactgca ccagcctcgt ctccctcgac
     1201 ctcagcctca actacatcaa tgggtccatc ccggcatccc tcggcgacct tggcaacctg
     1261 caggacctca tcctgtggca gaacgagctg gagggcgaga taccggcgtc cctgtcgcgc
     1321 attcagggcc tcgagcatct catcctcgac tacaacgggc tcacgggtag catcccgccg
     1381 gagctagcca agtgcaccaa gctgaactgg atttctttgg cgagcaaccg gctgtccggg
     1441 ccaatccctt catggcttgg gaagctcagc tacttggcta tcttgaagct cagcaacaat
     1501 tccttctcgg ggcctatacc gccagagctc ggtgactgcc agagcttggt gtggctggac
     1561 ctgaatagca atcagctgaa tggatcaata cccaaagagc tggccaaaca gtctgggaag
     1621 atgaatgttg gcctcatagt tggacggcct tacgtttatc ttcgcaacga cgagctgagc
     1681 agcgagtgcc gtggcaaggg gagcttgctg gagtttacca gcatccgacc tgatgacctc
     1741 agtcggatgc cgagcaagaa gctgtgcaac ttcacaagaa tgtatgtggg gagcacggag
     1801 tacaccttca acaagaatgg ttcgatgata tttctcgatt tgtcatataa tcagctggac
     1861 tcggcgattc ctggcgagct gggggacatg ttctacctca tgatcatgaa tcttgggcac
     1921 aacctactgt caggtaccat cccatcgcgg ctagcagagg ccaagaagct tgcggtgctt
     1981 gacctgtcgt ataaccagtt ggaagggcca atacccaact ctttctcggc actttccttg
     2041 tcggagatca atctgtcaaa taatcagctg aatggaacaa ttccagagct tggttccctt
     2101 gccacatttc cgaagagcca gtatgagaat aacactggtt tatgtggctt cccactgcca
     2161 ccatgtgacc atagttcccc aagatcttcc aatgaccacc aatcccaccg gaggcaggca
     2221 tcgatggcaa gcagtatcgc tatgggactg ttattctcac tgttctgtat aattgtgatc
     2281 atcatagcca ttgggagcaa gcggcggagg ctgaagaatg aggaggcgag tacctctcgt
     2341 gatatatata ttgatagcag gtcacattct gcaactatga attctgattg gaggcaaaat
     2401 ctctccggta caaatcttct tagcatcaac ctggctgcat tcgagaagcc attgcagaat
     2461 ctcaccctgg ctgatcttgt tgaggccaca aatggcttcc acatcgcatg ccaaattggg
     2521 tctggtgggt ttggtgatgt ctacaaggca cagctcaagg atgggaaggt tgttgcaatc
     2581 aagaagctaa tacatgtgag cgggcagggt gaccgggagt tcactgcaga aatggagacc
     2641 attggcaaga tcaaacaccg taaccttgtt ccacttcttg gctattgcaa ggctggtgag
     2701 gagcggttgt tggtgtatga ttacatgaag tttggcagct tggaggatgt gttgcatgac
     2761 cgcaaaaaga tcggtaaaaa gctgaattgg gaggcaagac ggaaaatcgc tgttggagca
     2821 gcaaggggtt tggcattcct ccaccacaat tgcattcctc acatcattca ccgagacatg
     2881 aagtcgagca atgtgcttat cgatgaacaa ctggaagcaa gggtatctga tttcggtatg
     2941 gcgaggctga tgagcgtggt ggatacacac cttagcgtgt ccactcttgc tggaacgcca
     3001 gggtatgtac caccggagta ctaccagagc ttcagatgca ccaccaaggg tgatgtttat
     3061 agctatggtg ttgtgttgct ggagctgctc accgggaaac cgccgacgga ctcggcagac
     3121 tttggcgagg acaataacct tgtggggtgg gtcaagcagc acaccaaatt gaagatcacg
     3181 gatgtcttcg accctgagct actcaaggag gatccatccg tcgagcttga gctgctggag
     3241 catttgaaaa tcgcctgtgc gtgcttggat gaccggccgt cgaggcggcc gacgatgctg
     3301 aaggtgatgg caatgttcaa ggagatccaa gctgggtcga cggtcgactc gaagacctcg
     3361 tcggcggcag cgggctcgat cgatgaggga ggctatgggg tccttgacat gcccctcagg
     3421 gaagccaagg aggagaagga ttagaaacaa caaccaccga cacacaggag aaacagccgg
     3481 cggtgagtgg ccaccaacga ggccagtcgg cggcgaaatg cccgtagaaa caacagtcat
     3541 tcagaatcag atggatgcca ttttgaactc tccacacaag cttagcaatc gcttctgatg
     3601 gtgctacaag ataagaattt tccagctgta ggttgatcag tcgaagttgt tatgtaccta
     3661 taggagtaga tcttttcttc tttctttttt cgcagctttc ttcgtctccc tgtttgtttt
     3721 tcccgtcgcg tcgcagtaag agctgtgtat gtacatatat aaatgttgaa ttttctttgg
     3781 cgc
//