LOCUS       AK073742                1640 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:J033067G24, full insert
            sequence.
ACCESSION   AK073742
VERSION     AK073742.1
KEYWORDS    CAP trapper; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1640)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..1640
                     /clone="J033067G24"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     CDS             132..1067
                     /db_xref="Osa1:LOC_Os12g42400"
                     /db_xref="RAP-DB:Os12g0618600"
                     /note="(RAP Annotation release2) Similar to
                     Transcriptional activator HAP2"
                     /note="(Rice Genome Annotation Project) nuclear
                     transcription factor Y subunit A-2, putative, expressed"
                     /note="mapping to R12-TIGRv4S1-000822R (Chr.12: short
                     arm=26313288, long arm=26317600, direction=reverse) for
                     TIGR Pseudomol ver4"
                     /protein_id="BAG93616.1"
                     /translation="MMSFNKSQEGFGQVAAVATLASNGGGSLPWLLYGEPLGQGKPAM
                     SPEGVVPRAQTPLDPPQVPAMDRGVPEILNFSMVPGKGEKCSEHSTTIALQSPFAEYN
                     GCFELGLGQSVVPSNYPYADQHYGLLSPYGVRPTPSGRILIPPNMPADAPIYVNAKQC
                     SAIIRRRHARAKAERENRLVKARKPYLHESRHLHAMRRARGSGGRFLNTKKETNGKTT
                     GGGRKVMDIIIPPLCPAASPSSEQCNPSSVSSLSGSEVSSIYEHEDMDHFHSFDHLRT
                     HFFTPLPSLMDVEHGAGNPFKWTAASDGCCDLLKA"
BASE COUNT          402 a          395 c          422 g          421 t
ORIGIN      
        1 ggctgctgct gaaagcctga tgaaattggg tgattaggtg cttaacataa tcccaatcct
       61 agaaaaatac attcggagtg gttgctgctg agctcaacca atcaagcttg ttggggaggc
      121 aagcagtcac aatgatgagc ttcaacaaga gccaagaagg atttgggcag gttgctgctg
      181 tggccaccct ggcctccaat ggaggaggct ctctaccatg gctgctgtac ggcgagccac
      241 tggggcaggg gaagccggcc atgtcgccgg agggcgtggt gccgagagca cagactcctc
      301 tggatcctcc tcaggttcca gccatggaca ggggtgtccc tgaaattctg aacttctcca
      361 tggttccagg taaaggagaa aaatgttctg agcactcaac tactattgct ctgcagtcac
      421 catttgcaga atataatggc tgttttgagc tgggccttgg tcaatctgtg gttccctcta
      481 attatcctta tgctgaccag cactatggcc tactttctcc ttatggagtg agaccaacgc
      541 ctagcgggcg aattcttatt ccaccaaata tgccagctga tgcaccaatt tatgtgaatg
      601 caaaacagtg ttcagccatc attcgacgtc gccatgctcg tgccaaggca gagagggaga
      661 ataggctggt caaagctaga aaaccatatc ttcacgaatc acgccatctt catgcaatgc
      721 gtcgtgcaag aggctctggt gggcgcttcc tcaacacgaa gaaagagacc aatgggaaaa
      781 ccactggtgg aggcaggaag gtgatggaca tcatcatccc gcctctgtgc cccgccgcat
      841 ctcccagctc ggagcagtgc aacccaagca gcgtttccag cctgtccggg tcagaggtgt
      901 cgagcatata tgaacacgaa gacatggacc acttccatag ctttgatcat ctccggacac
      961 acttcttcac cccgctcccg agcctcatgg atgtcgagca cggggctggt aaccccttca
     1021 agtggacagc agcctctgat ggctgctgtg acctcctcaa agcatgacta gaggggggat
     1081 acaccgggca gccgaagctg gcaaacatca gcagtttctg ctggatacat tgcccagctc
     1141 caggtcaggg attgtccctg ctggtattgg ctgtctgtag gcaactcatt cttggctgat
     1201 cggttccgct catcgcctac ttgtcccgga aactccagca ccggtttctg ggatcctgcg
     1261 gtgatcagaa caacccatcg cgtgtaaaaa aaaaaaaaaa tcatctatgc tatgctgtta
     1321 ctgcttgcta ccattatctg aactgctact actaggtagc aagcttaatc tggcaaggta
     1381 aataaagtct ggaactttga actggttcca gtggtgatga ttgtggtgtg cttgtatcct
     1441 gataactatt gtgagtttga gacctggctt tgttgatcta ctgaactact actgtagcac
     1501 tatgcttgaa gtttgtgtgg gcttggtttg cagtttgtat tgttaaaaaa aactcaaatc
     1561 tagtgatgta ttaagacctt gtttgtgtgt atcttgttaa tgtggtatat ctgcaagaag
     1621 gtataatctg tttgggagtg
//