LOCUS AK073742 1640 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J033067G24, full insert sequence. ACCESSION AK073742 VERSION AK073742.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1640) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1640 /clone="J033067G24" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 132..1067 /db_xref="Osa1:LOC_Os12g42400" /db_xref="RAP-DB:Os12g0618600" /note="(RAP Annotation release2) Similar to Transcriptional activator HAP2" /note="(Rice Genome Annotation Project) nuclear transcription factor Y subunit A-2, putative, expressed" /note="mapping to R12-TIGRv4S1-000822R (Chr.12: short arm=26313288, long arm=26317600, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG93616.1" /translation="MMSFNKSQEGFGQVAAVATLASNGGGSLPWLLYGEPLGQGKPAM SPEGVVPRAQTPLDPPQVPAMDRGVPEILNFSMVPGKGEKCSEHSTTIALQSPFAEYN GCFELGLGQSVVPSNYPYADQHYGLLSPYGVRPTPSGRILIPPNMPADAPIYVNAKQC SAIIRRRHARAKAERENRLVKARKPYLHESRHLHAMRRARGSGGRFLNTKKETNGKTT GGGRKVMDIIIPPLCPAASPSSEQCNPSSVSSLSGSEVSSIYEHEDMDHFHSFDHLRT HFFTPLPSLMDVEHGAGNPFKWTAASDGCCDLLKA" BASE COUNT 402 a 395 c 422 g 421 t ORIGIN 1 ggctgctgct gaaagcctga tgaaattggg tgattaggtg cttaacataa tcccaatcct 61 agaaaaatac attcggagtg gttgctgctg agctcaacca atcaagcttg ttggggaggc 121 aagcagtcac aatgatgagc ttcaacaaga gccaagaagg atttgggcag gttgctgctg 181 tggccaccct ggcctccaat ggaggaggct ctctaccatg gctgctgtac ggcgagccac 241 tggggcaggg gaagccggcc atgtcgccgg agggcgtggt gccgagagca cagactcctc 301 tggatcctcc tcaggttcca gccatggaca ggggtgtccc tgaaattctg aacttctcca 361 tggttccagg taaaggagaa aaatgttctg agcactcaac tactattgct ctgcagtcac 421 catttgcaga atataatggc tgttttgagc tgggccttgg tcaatctgtg gttccctcta 481 attatcctta tgctgaccag cactatggcc tactttctcc ttatggagtg agaccaacgc 541 ctagcgggcg aattcttatt ccaccaaata tgccagctga tgcaccaatt tatgtgaatg 601 caaaacagtg ttcagccatc attcgacgtc gccatgctcg tgccaaggca gagagggaga 661 ataggctggt caaagctaga aaaccatatc ttcacgaatc acgccatctt catgcaatgc 721 gtcgtgcaag aggctctggt gggcgcttcc tcaacacgaa gaaagagacc aatgggaaaa 781 ccactggtgg aggcaggaag gtgatggaca tcatcatccc gcctctgtgc cccgccgcat 841 ctcccagctc ggagcagtgc aacccaagca gcgtttccag cctgtccggg tcagaggtgt 901 cgagcatata tgaacacgaa gacatggacc acttccatag ctttgatcat ctccggacac 961 acttcttcac cccgctcccg agcctcatgg atgtcgagca cggggctggt aaccccttca 1021 agtggacagc agcctctgat ggctgctgtg acctcctcaa agcatgacta gaggggggat 1081 acaccgggca gccgaagctg gcaaacatca gcagtttctg ctggatacat tgcccagctc 1141 caggtcaggg attgtccctg ctggtattgg ctgtctgtag gcaactcatt cttggctgat 1201 cggttccgct catcgcctac ttgtcccgga aactccagca ccggtttctg ggatcctgcg 1261 gtgatcagaa caacccatcg cgtgtaaaaa aaaaaaaaaa tcatctatgc tatgctgtta 1321 ctgcttgcta ccattatctg aactgctact actaggtagc aagcttaatc tggcaaggta 1381 aataaagtct ggaactttga actggttcca gtggtgatga ttgtggtgtg cttgtatcct 1441 gataactatt gtgagtttga gacctggctt tgttgatcta ctgaactact actgtagcac 1501 tatgcttgaa gtttgtgtgg gcttggtttg cagtttgtat tgttaaaaaa aactcaaatc 1561 tagtgatgta ttaagacctt gtttgtgtgt atcttgttaa tgtggtatat ctgcaagaag 1621 gtataatctg tttgggagtg //