LOCUS AK073710 1526 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033061L21, full insert
sequence.
ACCESSION AK073710
VERSION AK073710.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1526)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1526
/clone="J033061L21"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1526
/db_xref="Osa1:LOC_Os03g43990"
/db_xref="RAP-DB:Os03g0641300"
/note="(RAP Annotation release2) Non-protein coding
transcript, unclassifiable transcript"
/note="(Rice Genome Annotation Project) transposon
protein, putative, Mutator sub-class, expressed"
/note="mapping to R03-TIGRv4S1-001129R (Chr.3: short
arm=24659206, long arm=24660732, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 356 a 262 c 381 g 527 t
ORIGIN
1 gattcccccc attggagtgg ttcttcgttt gtttggagga gtggttggat tagttggtgg
61 ccggccgaaa ggagagggcc gtgaattggt gagcctgctt cttctctgct ctgtggttct
121 tggaagaggc agagagagag agagagagag ctcttttcga tggcgtccat ggtttgagct
181 tctggagcgg tggttggggg cttgcgcggt tgcggttggg gtgttcttgc gtgccatctc
241 ctacttaggc ggcggcggcg gaatcgtttg aggttcagag agatttctgc ccgggatggc
301 gtcgtcggtg aagctgggat caaagcctga tgctttcaga aggcaagggc aggcatggta
361 aagctctcgc cttcttcttc ttctttttta atttactcac ttcttttatt tttcatcctt
421 agttttctct gtgttttgat gtgttgtcat gaaagactcg cccttgtctg cgttctttgt
481 tgttgtttcg ctatctggga cctgagaggg gagacaaatt gtgtgaaaat ttggccaaaa
541 aaaggttcct ttttggctgc ggattcatga tatttttggg ggtatggatg ggtagagagc
601 taagtatttc tgaaagtgtg actcttcaga agtcaactcg tactttgtct gtgctgcacg
661 cctgcactct atgcgcgctc ttttcgtgat gcatttcttg catttgtttc gttttttgcg
721 tactcagttc tcttcttcag tccattgcaa ttacaagatg ctgtattagc acttggcaaa
781 gctggtccaa ctaatagtat tccacttgtt gggagaaagt aaagttttgg gctgaaacct
841 gaattagttg ttcataggtg aggttttgca aaaagtttga atttcaaata atcaaattat
901 gtagtttttc ccccttaaat caggttgtac ttttcagtat accctatata acactagagt
961 tgaatcttgc atatttctcc gtagtccgta gagaaataag tgagaattca tctttatcac
1021 ccatttggtg cattattgcc cacacactaa atgaattatg gacattgaag ctggtgggtt
1081 aatcattctt attcaatcca caaatattcc agtaaattgc agttgactgc ttgtgcaatt
1141 agtttatggg gagggtgtcg tgaagctttt cgtggatcca catcacatta gttggcagtg
1201 agatgctgtt gttcctcata acagaggagt tgtaaccatc atgtaattat ttagatggga
1261 gcaggtttgg atttgttttc agtggaccaa tcaaatattg taattttcaa actcaatcag
1321 cctccttcca gcctgttgaa tctaagtatt aaatactctg atgtgtctgt tctaagagag
1381 ataagacagt catgatgtat tgatgttata tgttgtcttg tggacaataa atactaaatg
1441 atgtcccgcg ctttgctgcg ggatatatgt tagatattgg agaaatgatg aaatgatttg
1501 gattgaaata ttatgaaaat gattcg
//