LOCUS AK073703 3538 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033055B18, full insert
sequence.
ACCESSION AK073703
VERSION AK073703.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3538)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3538
/clone="J033055B18"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 320..3214
/db_xref="Osa1:LOC_Os08g27840"
/db_xref="RAP-DB:Os08g0366000"
/note="(RAP Annotation release2) Phosphoenolpyruvate
carboxylase"
/note="(Rice Genome Annotation Project)
phosphoenolpyruvate carboxylase 2, putative, expressed"
/note="mapping to R08-TIGRv4S1-000482R (Chr.8: short
arm=16831868, long arm=16837720, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG93600.1"
/translation="MAGKVEKMASIDAQLRMLAPAKLSEDDKLVEYDALLLDRFLDIL
QDLHGDDLRELVQECYEIAAEYEGKHDSQKLDELGNMLTSLDPGDSIVMAKAFSHMLN
LANLAEEVQIAYRRRIKLKKGDFADENSALTESDIEETFKRLVVDLKKSPAEVFDALK
SQTVDLVLTAHPTQSVRRSLLQKHSRIRNCLVQLYSKDITPDDKQELDEALQREIQAA
FRTDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRLDTALKNIGIDERVPYNAPL
IQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMASNLYCSQIEDLMFELSMWRCNDELR
ARADELHLSSKKDAKHYIEFWKKVPPSEPYRVVLGDVRDKLYNTRERARQLLSSGYSD
IPEETTLTSVEQFLEPLELCYRSLCDCGDRVIADGTLLDFLRQVSTFGLCLVRLDIRQ
ESDRHTDVLDAITTYLGIGSYREWSEERRQDWLLSELNGKRPLFGPDLPKTDEIADVL
DTFRVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVKTPLRVVPLFEKLADLES
APAAVARLFSIDWYRERINGKQEVMIGYSDSGKDAGRLSAAWQLYKSQEELINVAKEF
GVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFR
TLQRFTAATLEHGMHPPIAPKPEWRALLDEMAVVATKEYRSIVFQEPRFVEYFRLATP
EMEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGSAFKHILEKD
IRNLHMLQEMYNEWPFFRVTIDLVEMVFAKGDPGIAALYDKLLVSEELWPLGEKLRAN
CEETKQLLLQVAGHKDLLEGDLYLKQRLRLRNAYITTLNVCQAYTMKRIRDPDYHVTL
RPHMSKEIMDWSKPAAELVKLNPTSEYAPGLEDTLILTMKGIAAGMQNTG"
BASE COUNT 893 a 868 c 906 g 871 t
ORIGIN
1 gtaggtggaa gagacggaca gaggccacta cccgtgcacc acgccccctc tcccacaatc
61 tcgcaaaaaa gttgattttc tttttcagct tcctcctccc ctcctccgct tctcatcaat
121 ccactagcat atcagatcag attcctgtac acttcccttt cctcgcatcc aatcccgact
181 atcaaatcat caccatcctt ttgcaaaacc aaaaaaaaaa aaagtagata aaagaagaag
241 gttcttgcat ccaagagagg aggacactgt ccgtcgtgca gcgtttcttg cttggttgaa
301 tcgggtggtt ttggggggga tggcggggaa ggtggagaag atggcgtcga tcgacgcgca
361 gctgcggatg ctggcgccgg cgaagctgtc ggaggacgac aagctggtgg agtacgacgc
421 cctcctcctc gaccgcttcc tcgacatcct ccaggacctc cacggcgacg acctccgcga
481 gctggtccaa gaatgctatg agatcgctgc tgagtatgaa gggaagcatg actcccaaaa
541 gctcgatgaa cttggcaaca tgttgacaag cttggatcct ggtgactcca ttgtgatggc
601 caaagctttc tcccacatgc ttaatttggc taacttggcc gaggaggtcc agattgcata
661 caggaggaga atcaagctca agaagggtga ctttgctgat gagaactcgg cactgacaga
721 atctgacatt gaagaaactt ttaagaggct tgttgttgac ctgaagaaat caccagcaga
781 ggtctttgat gcccttaaga gtcagactgt tgacctggtt ttgactgcac atccaacaca
841 gtcagtgagg aggtcactgc ttcaaaaaca ctcaaggata aggaattgtt tggttcaact
901 atactcaaag gatatcacac cagatgataa acaggagctt gatgaggctc tccagaggga
961 gattcaagca gcctttagaa ctgatgagat ccgaagaacc cagccaactc ctcaagatga
1021 aatgagggct ggtatgagtt actttcatga gacaatctgg aaaggtgttc cgaagttctt
1081 acgccgtctg gacactgcct tgaagaacat cggaattgat gagcgtgttc cttataatgc
1141 acctctcatt cagttctctt cttggatggg aggagaccgt gatggaaatc caagagtgac
1201 accagaagtc acaagggatg tatgcttgct tgctagaatg atggcttcaa atttatactg
1261 ctcgcaaatt gaggatctca tgtttgagct gtctatgtgg cgatgcaatg atgagcttcg
1321 ggcacgagca gatgagctgc atctctcctc aaagaaagat gcaaagcact atatagaatt
1381 ctggaagaag gttccgccca gtgagccata ccgagttgtt ctaggtgatg tgagagacaa
1441 gctgtacaac acacgtgaac gagcacgcca gttattatcc agcggatatt ctgacattcc
1501 tgaagaaacc actctcacca gtgttgaaca gttcttagag cctctggagc tatgttacag
1561 gtcactctgc gattgcggtg accgtgtaat tgctgatggg acccttctgg acttcttgcg
1621 ccaggtgtct acctttgggc tgtgccttgt gaggcttgac attaggcaag aatctgacag
1681 gcacaccgat gtcctcgatg ccatcaccac atacctggga ataggatcat accgtgagtg
1741 gtccgaggaa cgccgtcagg actggctctt gtctgaactc aatgggaagc gcccattgtt
1801 tggcccagac cttcccaaga ccgatgagat tgctgacgtt ctagacacgt tccgcgtgat
1861 agctgagctt cccgctgaca attttggggc ctatatcatt tccatggcga cagctccgtc
1921 agacgtgctt gctgttgagc tcctccaacg tgaatgccat gtgaagacac cacttagagt
1981 tgtcccactg tttgagaagt tggctgatct tgaatctgcc ccagcagcag tggccagact
2041 gttctccata gattggtaca gagaaaggat aaatggcaaa caggaggtca tgattggcta
2101 ttcggactcg ggtaaggacg ccggtcgtct ctcggcagct tggcagctgt acaagtctca
2161 ggaggagctc atcaacgttg ccaaggagtt tggggtgaag ttgacaatgt tccatgggcg
2221 cggtgggact gtcggaagag gcggaggtcc cactcatctt gccatcttgt ctcagccacc
2281 agacacaatc catggatctc tccgggtcac tgtccagggt gaagtcattg agcagtcctt
2341 tggtgaggag cacctttgct tcaggacact gcagcgtttc acggctgcca ctctggagca
2401 tggcatgcat ccaccaattg cgccgaaacc agaatggcgt gctctgcttg atgagatggc
2461 tgtggtggct acaaaggaat accggtccat cgtcttccag gaaccacgct ttgtcgagta
2521 tttccgcctt gcaacaccag agatggagta tggaaggatg aatataggaa gcaggccatc
2581 caagagaaag ccgagtggtg gcatcgagtc actccgtgcc atcccatgga tcttcgcgtg
2641 gacgcaaact cgcttccacc ttcctgtctg gcttggcttc ggttctgcct tcaagcacat
2701 cctggagaag gacatcagga acctccacat gctccaggag atgtacaatg agtggccgtt
2761 cttcagagtc acgatcgatc tggttgagat ggttttcgcc aagggtgacc ctggcatcgc
2821 cgcattgtac gacaagctcc ttgtctccga ggagctatgg cctctgggag agaaactgag
2881 ggccaactgt gaagaaacca aacagcttct ccttcaggtt gctggacaca aggatcttct
2941 cgaaggtgat ctctacctga agcagcgcct tcgcctccgc aatgcctaca tcaccaccct
3001 gaatgtctgc caggcttaca cgatgaagcg aatccgcgac ccggactacc atgtcacgct
3061 gcgcccccac atgtccaagg agatcatgga ctggtctaag ccggctgcgg agctggtgaa
3121 gctgaacccg accagtgagt atgcgccggg gctggaggac accctcatcc tgaccatgaa
3181 gggaattgct gctggaatgc agaacaccgg ctaagcgaac tatcaactat gaagtgcctg
3241 aattcacacc gttttatatg gactcttatc ttgatttcgg tcatttgctc tcggccattt
3301 aattttgccg atgcagaggc tcgtgcagtt tctaatttct ttcggaagat attttcaata
3361 atggagttgt acaagaacat caattaatca aaataaagtg gatattatgt tcattatcgt
3421 ttagagcaac ctggtaaagc catttttttg tgtagaccac atagtgagtg tgttgaaatt
3481 ccatttgctt aatgaaactg ccattatcta agtaaagtca aagggctcct ttatattg
//