LOCUS AK073610 1425 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033049I18, full insert
sequence.
ACCESSION AK073610
VERSION AK073610.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1425)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1425
/clone="J033049I18"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 98..1219
/db_xref="Osa1:LOC_Os09g35800"
/db_xref="RAP-DB:Os09g0526700"
/note="(RAP Annotation release2) Similar to UDP-glucose
4-epimerase (EC 5.1.3.2) (Galactowaldenase)
(UDP-galactose 4-epimerase)"
/note="(Rice Genome Annotation Project) UDP-glucose
4-epimerase, putative, expressed"
/note="mapping to R09-TIGRv4S1-000682R (Chr.9: short
arm=20600140, long arm=20602522, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG93548.1"
/translation="MVSGGGVAAENGEMVGNGEGRKGAGASVLVTGGAGYIGTHTVLR
LLEKGFAVTVVDNFHNSVPEALDRVRLIAGAALSARLDFIAGDLKSKDDMEKVFAAKR
YDAVIHFAGLKAVGESVAHPQMYYENNVAGTMNLYSAMTKYGCKKIVFSSSATVYGQP
EKTPCVEDSKLSALNPYGTTKLVLENYFRQVQAADPEMRVILLRYFNPIGAHRSGDIG
EDPRGIPNNLLPYIQQVAVGRRPELNVYGVDYPTRDGTAIRDYIHVVDLADGHIAALE
KLFATPDIGCVAYNLGTGCGTTVLEVVKAFEEASGKKIPIKICPRRPGDCTEVYASTD
KAKKELGWSARFGIEDMCRDQWNWAKKNPYGYSANAEQN"
BASE COUNT 336 a 382 c 437 g 270 t
ORIGIN
1 gacggtgcgg tttccctttc ccatataaat cccccccgcg tccgctgcga actactaaac
61 cgagagagag aggcgcacac acgaagacga ggcggcgatg gtgagcggcg gaggagtagc
121 ggcggagaac ggcgagatgg tggggaacgg ggaggggagg aagggtgcgg gggcgagcgt
181 gctggtgacg gggggagcgg ggtacatcgg gacgcacacg gtgctgcggc tgctggagaa
241 ggggttcgcg gtcaccgtcg tcgacaactt ccacaactcc gtcccggagg cgctcgaccg
301 cgtccgcctc atcgccggcg ccgccctctc cgcccgcctc gacttcatcg ccggggatct
361 caagagcaag gacgacatgg agaaggtgtt cgccgccaag aggtatgacg ccgtgatcca
421 cttcgccggg ctgaaggcgg tgggggagag cgtcgcgcac ccgcagatgt actacgagaa
481 caacgtcgcc ggcaccatga acctctactc cgccatgacc aagtacggct gcaagaagat
541 agtgttctcg tcgtcggcga cggtgtacgg ccagccggag aagaccccct gcgtcgagga
601 ttccaagctg agcgctctca acccatacgg caccaccaag ctcgtcctgg agaactactt
661 ccggcaggtg caggccgccg acccggagat gagggtgatc ctgctcaggt acttcaaccc
721 catcggcgct caccggagcg gcgacatcgg ggaggacccc aggggcatcc ccaacaacct
781 tcttccgtac atccagcagg tcgccgtcgg ccgccgcccc gagctcaacg tctacggcgt
841 cgactaccca accagggacg gcaccgcgat cagggattac atacatgtag tggaccttgc
901 cgatggccac attgccgcac tggagaagct cttcgctact cctgacattg gttgtgtggc
961 ttacaatcta ggaacagggt gtggaacaac ggtgctcgag gtggtgaagg cgttcgagga
1021 ggcgtccgga aagaaaattc ctatcaagat ttgccccaga agacctggag attgcactga
1081 ggtttacgct tccactgaca aggccaagaa ggagctcgga tggagtgctc ggtttggaat
1141 agaggacatg tgcagggacc agtggaattg ggccaagaag aatccgtacg gatacagcgc
1201 caatgctgag cagaattagg gcgatcatat taccacttat atagtactag tatcaaaatt
1261 gtccatggtc ttatgaactg tgtgactaga aaatgttaat aagacatgcg tgcctcttaa
1321 gtggagtata ccaattctta tttagtcgaa tccgttgtga ttttagatac tggcaaatgt
1381 taatcaggtt tatttaaata ctatactagt agcaagatca aattg
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