LOCUS AK073581 1648 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033048G13, full insert
sequence.
ACCESSION AK073581
VERSION AK073581.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1648)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1648
/clone="J033048G13"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 126..1457
/db_xref="Osa1:LOC_Os03g63430"
/note="(Rice Genome Annotation Project) 26S proteasome
non-ATPase regulatory subunit 12, putative, expressed"
/note="mapping to R03-TIGRv4S1-001765R (Chr.3: short
arm=35773116, long arm=35776896, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG93530.1"
/translation="MEGNSTNLDAAIESLLNVEKQMRLAGDVAGTRKAAIDIVELCYK
AGAWKTLNDQIVVLSKRRGQLKQAITAMVQKAMEYIDLTPDMDTRIELIKTLSSVSAG
KIYVEIERARLIKRLAKIKEEQGQIDEAADLMQEVAVETFGSMAKTEKIAFILEQVRL
CLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNIVQEAPAEIPSLLELKRIYY
ELMIRYYSHNNDYLEICRCYKSIYEIPSIKEDPSKWIPVLRKICWYLVLAPHDPMQSS
LLNATLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWEFFKDEYANEKNFLGGALGDKA
AEDLKLRIIEHNILVVSKYYSRITLKRLADLLCLSLQEAEKHLSDMVNSKSLIAKIDR
PMGVVCFRTAQDSNGILNSWAANLEKLLDLVEKSCHQIHKETMIHKAVLKA"
BASE COUNT 461 a 376 c 404 g 407 t
ORIGIN
1 gtagagccct actccccttc tctcctcttc ttcctctccc gcaagcaaag cgcacgccgc
61 ctttgcctta gatctcctcg actccgccgc cgccgccggc gcctccccac ggtccctccc
121 tcgccatgga gggtaacagt accaacctcg atgcggcgat agagtcgctc ctcaacgtgg
181 agaagcagat gaggctggcc ggcgatgtcg ccggcacgag gaaggccgcc atcgacatcg
241 tcgagctctg ctacaaggcc ggcgcctgga agacgctcaa cgatcagatc gtggtcctct
301 ccaagaggag gggccagctt aagcaggcta tcactgccat ggttcagaaa gcaatggagt
361 acattgactt aacgccagac atggacacac gtattgagct aatcaagacg ttgagcagtg
421 tatctgctgg aaaaatatat gtggagatag agagagcaag attgatcaaa agacttgcaa
481 aaatcaaaga ggagcaggga cagattgatg aggctgctga tttaatgcaa gaagttgctg
541 ttgaaacatt tggctccatg gcaaagacag aaaagattgc attcattcta gagcaggtcc
601 ggctgtgctt ggatcgtcaa gattatgtac gcgcacagat tttatccagg aaaatcagtc
661 ctagggtatt tgatgcagac ccgtcaaagg aaaaaaagaa accgaaagaa ggtgataata
721 ttgttcagga agccccagca gagatacctt ccctcctgga actgaagcgc atctactatg
781 aactgatgat tcgctattac tcgcacaaca atgattacct ggaaatctgc cgttgctaca
841 agtcgattta tgaaattcca tcaataaaag aggatccatc aaagtggata ccggttctta
901 gaaagatctg ttggtatttg gtgttggcgc ctcatgatcc gatgcaatca agccttctca
961 atgccacact cgaagacaaa aatctctccg agataccaaa tttccggtta ctgctgaagc
1021 aacttgtaac catggaggtg attcagtgga caagcttgtg ggaattcttt aaagatgaat
1081 atgcgaatga gaagaatttt ctcggaggag ctttgggtga caaagctgca gaggatctga
1141 aattgaggat cattgaacat aatatcttgg ttgtttcgaa gtactattca aggattaccc
1201 tgaagaggct cgcagatctt ctttgcttga gcttgcagga ggcagagaaa cacctttcgg
1261 acatggtaaa ctcaaagtcg ctgattgcga agattgacag gccaatgggt gttgtatgct
1321 tccgcacagc acaagacagt aatggtatac tcaattcctg ggcggcgaac ctcgagaaac
1381 tcctcgatct tgttgagaag agctgtcacc aaatacacaa ggagacgatg atccataagg
1441 cggtgttgaa agcttaatct gtaaaccatt ttgcattggc tggcttgctt aggttctctg
1501 cctggccttc tatggtcaaa ttttacaatc acaggacgtc aagcttttct cagctcaagc
1561 atcacctgtt tgctttggga actcgtgcgt gaatgatctt aaatactgtg accacagaat
1621 gatgacatat tatttgttgt tggggttc
//