LOCUS AK073530 2062 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033046M10, full insert
sequence.
ACCESSION AK073530
VERSION AK073530.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2062)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2062
/clone="J033046M10"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2062
/db_xref="Osa1:LOC_Os12g40440"
/db_xref="Osa1:LOC_Os12g40450"
/db_xref="RAP-DB:Os12g0596000"
/note="(RAP Annotation release2) Similar to
Lipoyltransferase (EC 2.3.1.-) (Lipoyl-[acyl-carrier
protein]-protein- N-lipoyltransferase) (Lipoate-protein
ligase B)"
/note="(Rice Genome Annotation Project) expressed protein"
/note="(Rice Genome Annotation Project)
lipoyltransferase, putative, expressed"
/note="mapping to R12-TIGRv4S1-000761R (Chr.12: short
arm=24993068, long arm=24998778, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 494 a 527 c 493 g 548 t
ORIGIN
1 gagacggccg ccatggcctt ctcctcctcg cctcctcggt gactccgccc gccgccgctg
61 gctgccggcg cagcgccacc ctacaagtca ccgccccacc gcgagaggag ggcgggcatg
121 gccttgccct gctcctatgg ctcccactgc gccgccctgc ccttccccgc cgtggtctcc
181 agggcggcct cctcgccgcc accgcgctcc cgggggagaa ggcccagcct accacccgcc
241 ggatgcttcc acgccgcgcc aagggacgcc gctctggtgt ccggctccgc tgctggtggc
301 gtgagcagga ggaggtgtga gttatttgac ccccatcagc acatcgttcc atttgcggaa
361 tcttgggctt ggcagcagtc cattgtgaca aggaggaaag ggttggtagg cacggatgaa
421 gatcactccg acaccttaat cgcgctgcag catccaccag tttatacgct aggcactgac
481 agcaccgagg actacctcca tttcgatgtt aaagatgctc cttttgaggt tcaccgtatt
541 gaccgtggtg gggaggtgac atatcatggt cctggacagc ttgtaatgta cccgattatc
601 aacttgcgat atcatcaaat ggaccttcat tggtacttta gatcacttga agaggtgatc
661 attcgtgccc ttcagtccgc attttccatc aaggcatcta gggtagaagg tctaaccggt
721 gtctgggttg gagataagaa agttgcagca ataggaattc atgtctcacg atggatagca
781 tatcatggtc tagcactcaa cgtaaccact gacttaacac catttcaact cattgttccc
841 tgcggcataa aagatcgtgg cgttgggagc atcaaagaga tattgcaaat agcatctgat
901 ggaaaagaga tagacgaaac agcattgatc gataaagcct acagaaccct gcttaaagag
961 tttgctgaag ttttccagct ctctttatat cacaacccta actgggatct tcaggaaagc
1021 aaaaatttta gttaactgca gaatatttta ttggattctt gaaattcaac ttgcattgaa
1081 gtcagaaacc agtacaggtg gatagagagg caaacataat tagatcaaag tgaagtctcc
1141 ttcactctaa tatcaccaaa actgcagaac tagtcatcca tgtgcgcaag ctcaaacttt
1201 tgcttcacct gccaatcaga taacgctatc agttttgaag atgatggtaa tatgtaggag
1261 aggtgagaag ttcagccaag ccaattaacc ttctgttagg agccatgtgg gctgcaatat
1321 gggctggatc agctactttc caaagaagtc caagcaagcc caagaggcaa ccatatataa
1381 gtagcagtag cacttctagg aggggacgaa cagattgatt ggccaaggcg gcgaacggcg
1441 gcggcggcga cctggaggct ggctggcctc tttgtcgatc tctcctctat ctcccttctt
1501 ctctactagt ctagaagcta ctagaacctt ctagcccttg tatccttcca tcttccacct
1561 caaaaccact ccactattgt aacagacttg gttgttccct gtgttggatt tggcactgct
1621 atttctgaaa ttacattgtt gagtgggtct ctaacacctt ctttggggtt cgaagtggat
1681 ccatctgcct ttgtgtcaac acccggccat ggcttgcaag tacaatgttt ccccttctcg
1741 ataccgtcgt aaacggatgc gacatgttta ccacatccat tccaggtgaa cttgccacat
1801 ttgctgcatt ccaccttgaa gcacatcctg tgctcttctt caggtgctcc tttggtgcgt
1861 ggtgggcagt ggcaaatgtt gggatgttct tttggatagg ttcctctggt cttcatggat
1921 ttcagcattt tatagcatca tatgctgttc ttcttctgaa ggaacaatgt acaaataccc
1981 tatatatgct gttcaatgta gtctttgact ctttggtgat ggatacaatg tatggataat
2041 gtgtaaaatc ttgcagttag tg
//