LOCUS       AK073487                1774 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:J033041J03, full insert
            sequence.
ACCESSION   AK073487
VERSION     AK073487.1
KEYWORDS    CAP trapper; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1774)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..1774
                     /clone="J033041J03"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     CDS             42..1472
                     /db_xref="Osa1:LOC_Os08g36910"
                     /db_xref="RAP-DB:Os08g0473900"
                     /note="(RAP Annotation release2) Alpha-amylase isozyme 3D
                     precursor (EC 3.2.1.1) (1,4-alpha-D-glucan
                     glucanohydrolase)"
                     /note="(Rice Genome Annotation Project) alpha-amylase
                     isozyme 3D precursor, putative, expressed"
                     /note="mapping to R08-TIGRv4S1-000736F (Chr.8: short
                     arm=23208446, long arm=23210432, direction=forward) for
                     TIGR Pseudomol ver4"
                     /protein_id="BAG93480.1"
                     /translation="MPPDVEVIRHEHIDHPSSTRDRSVVVSSNSLSNTVSAYTDMKNT
                     SSLCLLLLVVLCSLTCNSGQAQVLFQGFNWESWKQQGGWYNMLKGQVDDIAKAGVTHV
                     WLPPPSHSVAPQGYMPGRLYDLDASKYGTAAELKSLIAAFHGKGVQCVADVVINHRCA
                     EKKDARGVYCVFEGGTPDDRLDWGPGMICSDDTQYSDGTGHRDTGEGFGAAPDIDHLN
                     PRVQRELTDWLNWLKSDVGFDGWRLDFAKGYSTDIAKMYVESCKPGFVVAEIWNSLSY
                     NGDGKPAANQDQGRQELVNWVNAVGGPAMTFDFTTKGLLQAGVQGELWRLRDGNGKAA
                     GMIGWLPEKAVTFVDNHDTGSTQKLWPFPSDKVMQGYAYILTHPGVPCIFYDHMFDWN
                     LKQEITALAAIRERNGINAGSKLRIVVADADAYVAVVDEKVMVKIGTRYDVGNAVPSD
                     FHQTVHGKDYSVWEKGSLRVPAGRHL"
BASE COUNT          372 a          527 c          541 g          334 t
ORIGIN      
        1 gattcccctg ccacggtgac cgtgcccccg gtgttctata tatgcccccc gacgtcgagg
       61 tcattcgcca cgaacacatc gatcatccat catctacaag agatcgatca gtagtggtta
      121 gcagcaactc actatcgaac acggtttcag cttacacaga tatgaagaac accagcagct
      181 tgtgtttgct gctcctcgtg gtgctctgca gcttgacctg taactcgggt caagcacagg
      241 tcctcttcca gggtttcaac tgggagtcgt ggaagcagca gggtggctgg tacaacatgt
      301 tgaaaggcca agtcgacgac atcgccaagg ccggggtcac ccacgtctgg ctgccgccgc
      361 cgtcgcactc cgtggcgccg caggggtaca tgccggggcg tctctacgac ctggacgcgt
      421 ccaagtacgg cacggcggcg gagctcaagt cgctgatcgc ggcgttccac gggaagggcg
      481 tccagtgcgt cgccgacgtc gtgatcaacc accggtgcgc cgagaagaag gacgcccgcg
      541 gcgtgtactg cgtgttcgag ggcgggacgc ccgacgaccg cctcgactgg ggccccggca
      601 tgatctgcag cgacgacacg cagtactccg acggcacggg ccaccgcgac accggcgagg
      661 ggttcggcgc ggcgcccgac atcgaccacc tcaacccgcg cgtccagcgg gagctcaccg
      721 actggctcaa ctggctcaag tccgacgtcg gcttcgacgg ctggcgcctc gacttcgcca
      781 agggatactc cacggacatc gctaagatgt acgtcgagag ctgcaagccg ggcttcgtcg
      841 tcgccgagat atggaactcg ctgagctaca acggcgacgg caagccggcg gccaaccagg
      901 accagggccg gcaggagctg gtgaactggg tgaacgccgt cggcgggccg gcgatgacgt
      961 tcgacttcac caccaagggc ctcctgcagg cgggcgtcca gggcgagctg tggcggctgc
     1021 gcgacggcaa cggcaaggcc gccggcatga tcgggtggct gccagagaag gccgtcacgt
     1081 tcgtcgacaa ccacgacacc ggctcgacgc agaagctttg gccgttcccc tccgacaagg
     1141 tcatgcaggg ctacgcctac atcctcaccc accccggagt cccctgcatc ttctacgacc
     1201 acatgttcga ctggaacctg aagcaggaga taaccgcgct ggcggcgatc agggagagga
     1261 acggcatcaa cgccgggagc aagctccgga tcgtcgtcgc cgacgccgac gcatacgtcg
     1321 ccgtcgtcga cgagaaggtc atggtgaaga tcgggacgag gtacgacgtg ggcaacgcgg
     1381 tgccgtcgga tttccatcag acggtgcacg gcaaggacta cagcgtctgg gagaaggggt
     1441 ccctccgcgt cccggcgggg cggcacctat agcgggctca agccctaaac tgaacgggat
     1501 agtcatgctc aaaccagttt ctacacggca agaatttact gattcttata cttttgcagt
     1561 caattaaatt atggttttta tatatgtaat tttgtatccg attgtagcgt tcgaataagt
     1621 aggcaggctc tctagcctct aggttaattg cggggcatat gtagcttgcc agttaattgt
     1681 gtttgtatca cgcagtttgt aaccgttggt gcaatatata atgtcaggtt caggatgcag
     1741 taaaaaatca tactgcaccg atcagtgagt tttt
//