LOCUS AK073487 1774 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J033041J03, full insert sequence. ACCESSION AK073487 VERSION AK073487.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1774) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1774 /clone="J033041J03" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 42..1472 /db_xref="Osa1:LOC_Os08g36910" /db_xref="RAP-DB:Os08g0473900" /note="(RAP Annotation release2) Alpha-amylase isozyme 3D precursor (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase)" /note="(Rice Genome Annotation Project) alpha-amylase isozyme 3D precursor, putative, expressed" /note="mapping to R08-TIGRv4S1-000736F (Chr.8: short arm=23208446, long arm=23210432, direction=forward) for TIGR Pseudomol ver4" /protein_id="BAG93480.1" /translation="MPPDVEVIRHEHIDHPSSTRDRSVVVSSNSLSNTVSAYTDMKNT SSLCLLLLVVLCSLTCNSGQAQVLFQGFNWESWKQQGGWYNMLKGQVDDIAKAGVTHV WLPPPSHSVAPQGYMPGRLYDLDASKYGTAAELKSLIAAFHGKGVQCVADVVINHRCA EKKDARGVYCVFEGGTPDDRLDWGPGMICSDDTQYSDGTGHRDTGEGFGAAPDIDHLN PRVQRELTDWLNWLKSDVGFDGWRLDFAKGYSTDIAKMYVESCKPGFVVAEIWNSLSY NGDGKPAANQDQGRQELVNWVNAVGGPAMTFDFTTKGLLQAGVQGELWRLRDGNGKAA GMIGWLPEKAVTFVDNHDTGSTQKLWPFPSDKVMQGYAYILTHPGVPCIFYDHMFDWN LKQEITALAAIRERNGINAGSKLRIVVADADAYVAVVDEKVMVKIGTRYDVGNAVPSD FHQTVHGKDYSVWEKGSLRVPAGRHL" BASE COUNT 372 a 527 c 541 g 334 t ORIGIN 1 gattcccctg ccacggtgac cgtgcccccg gtgttctata tatgcccccc gacgtcgagg 61 tcattcgcca cgaacacatc gatcatccat catctacaag agatcgatca gtagtggtta 121 gcagcaactc actatcgaac acggtttcag cttacacaga tatgaagaac accagcagct 181 tgtgtttgct gctcctcgtg gtgctctgca gcttgacctg taactcgggt caagcacagg 241 tcctcttcca gggtttcaac tgggagtcgt ggaagcagca gggtggctgg tacaacatgt 301 tgaaaggcca agtcgacgac atcgccaagg ccggggtcac ccacgtctgg ctgccgccgc 361 cgtcgcactc cgtggcgccg caggggtaca tgccggggcg tctctacgac ctggacgcgt 421 ccaagtacgg cacggcggcg gagctcaagt cgctgatcgc ggcgttccac gggaagggcg 481 tccagtgcgt cgccgacgtc gtgatcaacc accggtgcgc cgagaagaag gacgcccgcg 541 gcgtgtactg cgtgttcgag ggcgggacgc ccgacgaccg cctcgactgg ggccccggca 601 tgatctgcag cgacgacacg cagtactccg acggcacggg ccaccgcgac accggcgagg 661 ggttcggcgc ggcgcccgac atcgaccacc tcaacccgcg cgtccagcgg gagctcaccg 721 actggctcaa ctggctcaag tccgacgtcg gcttcgacgg ctggcgcctc gacttcgcca 781 agggatactc cacggacatc gctaagatgt acgtcgagag ctgcaagccg ggcttcgtcg 841 tcgccgagat atggaactcg ctgagctaca acggcgacgg caagccggcg gccaaccagg 901 accagggccg gcaggagctg gtgaactggg tgaacgccgt cggcgggccg gcgatgacgt 961 tcgacttcac caccaagggc ctcctgcagg cgggcgtcca gggcgagctg tggcggctgc 1021 gcgacggcaa cggcaaggcc gccggcatga tcgggtggct gccagagaag gccgtcacgt 1081 tcgtcgacaa ccacgacacc ggctcgacgc agaagctttg gccgttcccc tccgacaagg 1141 tcatgcaggg ctacgcctac atcctcaccc accccggagt cccctgcatc ttctacgacc 1201 acatgttcga ctggaacctg aagcaggaga taaccgcgct ggcggcgatc agggagagga 1261 acggcatcaa cgccgggagc aagctccgga tcgtcgtcgc cgacgccgac gcatacgtcg 1321 ccgtcgtcga cgagaaggtc atggtgaaga tcgggacgag gtacgacgtg ggcaacgcgg 1381 tgccgtcgga tttccatcag acggtgcacg gcaaggacta cagcgtctgg gagaaggggt 1441 ccctccgcgt cccggcgggg cggcacctat agcgggctca agccctaaac tgaacgggat 1501 agtcatgctc aaaccagttt ctacacggca agaatttact gattcttata cttttgcagt 1561 caattaaatt atggttttta tatatgtaat tttgtatccg attgtagcgt tcgaataagt 1621 aggcaggctc tctagcctct aggttaattg cggggcatat gtagcttgcc agttaattgt 1681 gtttgtatca cgcagtttgt aaccgttggt gcaatatata atgtcaggtt caggatgcag 1741 taaaaaatca tactgcaccg atcagtgagt tttt //