LOCUS AK073434 2219 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033042L19, full insert
sequence.
ACCESSION AK073434
VERSION AK073434.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2219)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2219
/clone="J033042L19"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2219
/db_xref="Osa1:LOC_Os02g58030"
/db_xref="RAP-DB:Os02g0826600"
/note="(RAP Annotation release2) Leucine-rich repeat,
typical subtype containing protein"
/note="(Rice Genome Annotation Project) leucine-rich
repeat-containing protein 40, putative, expressed"
/note="mapping to R02-TIGRv4S1-001620R (Chr.2: short
arm=35520760, long arm=35527176, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 580 a 500 c 480 g 659 t
ORIGIN
1 ggatctctct tctagtcttc ttcgtgggta ggctcgtgct gcctctgcct gctggtgcag
61 cagatcagat caggtctccg gcgatggcga tctgaggccg gaggctgctt gcttctgctt
121 gcatggagcg ggtgctcaaa tccgccaggg agtcgggctc cctcaacctc tccaatcgat
181 ccctcaggga ggtacccaag gaggtgtaca acaacttgga cacgggggct caggatgaga
241 aatggtggga gggagttgac cttcagaagc tcatattggc tcataacaac cttgaggtgt
301 tgcgtgaaga cctcagaaat ttgtcttcgc tcgttgtatt aaacattagt cacaacaata
361 tttcttccct ccccgcagct attggagacc ttcctttgct aaaatcgttg gatgtatctt
421 ctaatcaaat aaacgctttt cccgaagaga ttggttttgc gaccgcttta gtcaaggttg
481 actgctcaaa taattgcctt acagatctcc cagttagtct tgccagatgc ctggagttgt
541 cagaactcaa tgcgtcaaac aacactatat ccgtactgcc agatgaactt gctggctgtt
601 ccaagttatt cagattgaat ctagagggta acaagctcgt gacgctatca gacaagatgt
661 ttatgtcatg gacaatgctt acagagatga atgctgcaaa gaatctactg acagccatcc
721 cggatggtat tggtgcactg tcaaagctaa ttcgtctgga cctgcatcag aacaaaataa
781 ccctgattcc tccttccata aaagattgct cttctctagc agagttttat atgggaaata
841 acttgttgac atccatacca gaggatattg gcatgctatc gaacttggga atacttgatc
901 tacactctaa ccagctaaag gagtatcctg tcggggcttg tagactcaag ctctctttcc
961 ttgatctatc aaacaactca ttatctggtc tgcctgctga actaggtact atgacaaccc
1021 taagaaagct tctgcttact ggtaatccta tgaggacact tcggagtttc ttggtttctg
1081 gaccaacaac agcattatta aagtatctgc gcagtcggct ttcatctgat gaaggagcat
1141 caggatctgg aagcactcca acaaaagatg atcaaattgc tgcagcaaga agattgtctt
1201 tatcttctaa ggaactggac ttgagtggtc ttggtgtgac cagtgtacca cctgcagctt
1261 gggagacaaa tgatgtgatg aaactagatc tttctaagaa ttcaatagaa gatctgccaa
1321 acgagttgtc attatgctcg tcacttcaat ctttgatttt gtctaacaac aaaattaaaa
1381 ggtggcctgg caccgtattc tcctcccttg ccagcctttc tttgttaaag ctagacaaca
1441 atcctttggc agagatattg gctactgatc ttgaggccct gtctaaactt gaagtactag
1501 atttaagtgg cagtgcttct tctctacctg aaccctctgc ggtttcgaaa ttacctcacc
1561 taaaggaact ctacctaaga cgaatgaaac tccatggatt tcctgatagt ttattgggct
1621 taaaactgct gcgaattctt gatctgagtc agaattatct tacatctgtg ccagagggta
1681 tcaaagattt aacttctttg attgagcttg atctgtcgga caacaatata acaacactcc
1741 cacctgagct gggtttgctt gagcctaacc tgcaagtctt gaaacttgat ggaaatcccc
1801 tcaggagcat acggcggact ctgctggagc gaggaacgaa agcaattctg aagtatctca
1861 aagaaaagct acctgctgaa taaattctgg tgggaattaa tgtatgctgc atgatgttta
1921 ttgatcagtt cggccctctc gaactgcagt taccttttcc tggagtccat ttatccccaa
1981 attgtttttt ccttgattga tgtaattttt gcttggctat cttcttggtg atcgttatca
2041 ttctcctcat tttatccgcg gattgctgtc acactgaaag cttctcagct tgtgtataac
2101 caaccttgta tgcagtatac agcagatcag aattcggtta tgttgtagta ttttgacact
2161 ggaagtcccg cacgtgtgaa aaaaaatctg ccgccacaag tgaaactttg tttcttgcc
//