LOCUS AK073345 2349 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J033028L15, full insert sequence. ACCESSION AK073345 VERSION AK073345.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2349) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..2349 /clone="J033028L15" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 333..1472 /db_xref="Osa1:LOC_Os09g31478" /db_xref="RAP-DB:Os09g0491740" /note="(RAP Annotation release2) Auxin Efflux Carrier family protein" /note="(Rice Genome Annotation Project) auxin hydrogen symporter, putative, expressed" /note="mapping to R09-TIGRv4S1-000584R (Chr.9: short arm=18977152, long arm=18982472, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG93407.1" /translation="MGLLELFITACVPVLNMLLVTGVGSFLATDFVGILNKDARKYLN NIVFYVFNPSLVATYLAQTITLEGLAKLWFMPVNILLACTFGLILGWIVVHVTRAPAR LRGLILGCCSAGNWGNIFLIIIPALCKEKGSPFGAPDVCHTYGLAYSSLSMALGAVFL WTVAYNIMRATSKVADEGNARTNDTKVSNSGSSTGTASEENLSIPNDNNQCTLPLISN SSVPSSKTKVTLSERAKRFVSSMFGAIDFKKIFAPSTIAVIIGFIIGGTPLIRNAIIG ENAPLRVIHESADLIGGGAIPSVTLIMGGNLLNGLRGEASVQPSVIASVIVVRYILLP SLGTLLVKSAVHLGLIHPDPLYQFILLLQYAVPPAMNIGRKERME" BASE COUNT 572 a 552 c 601 g 624 t ORIGIN 1 gtagcgagca atatatatat aatcttcagt gagaaaagcc tcagaaccac accctcgaga 61 gcccgagctg gagaagaaga gaagaaaagg cggccacgga atcgtcggcc gccgccacct 121 ccgccgccgg cgcagagctc cgccggtatc ggccaggtgg ctcttctcct ctctcggaat 181 cgaaggcgag cgcgcgcttt aatttcttca tctccctcca tcttcttcat tggcggcggc 241 ggcggcggtt ttgcggcggc gcgtgcaggc cagcaagaac gaagctaagg acagggaaca 301 gtgactgctt gttgaactaa gctacaacaa tcatgggcct cctggagctc tttattacag 361 catgtgtgcc ggttctgaac atgcttctgg ttactggtgt tggatcattc ctggcaactg 421 attttgttgg catactgaac aaagatgcac ggaaatatct aaacaatata gtattttatg 481 tatttaatcc atctcttgtt gcgacctatt tagcacaaac aatcacattg gaaggcttgg 541 ctaaattgtg gttcatgcct gtgaatattc ttcttgcttg tacctttggg ttaatccttg 601 gatggatcgt ggtacatgtc accagagcac cggctaggct aagaggcctc attttgggtt 661 gctgttctgc tggcaattgg ggcaatattt ttctcatcat cattcctgct ctttgcaaag 721 agaaaggaag cccgtttgga gcacctgatg tttgtcacac ttatggatta gcgtattctt 781 cactctcaat ggctcttggt gctgtctttc tgtggactgt cgcgtataac attatgcgag 841 ccacttcaaa agtggctgat gaaggtaatg ctcgaacaaa tgatacaaaa gtatccaatt 901 cagggagcag tacaggaaca gcgtcagaag agaatttatc aatcccaaac gataacaatc 961 aatgcacact ccctttgata tccaattcaa gtgtaccttc aagcaaaact aaggtcacat 1021 tgtcagagag agcgaagcga tttgtatcat caatgttcgg agcaattgac ttcaagaaga 1081 tctttgctcc ttcaaccatt gctgtgatta ttgggtttat aattggagga acgcctctaa 1141 ttagaaatgc tattatcgga gaaaacgctc ctcttcgtgt cattcatgag tcagctgatc 1201 taataggtgg aggagcaatt ccatctgtca cactgataat gggagggaac ctcctcaatg 1261 gattacgagg agaagcaagc gtccagcctt cagtgatagc gagcgtaatc gtcgtcagat 1321 acattcttct cccttcgcta ggcaccttgc tcgtcaaatc ggcggttcac ctgggcctca 1381 tccaccctga tcccctctac cagttcatcc tattgcttca gtacgccgtg ccgccggcga 1441 tgaacattgg taggaaagaa agaatggaat aatcttgaat acgtaaaata catggccggt 1501 ccttaaactt gagagcaaat gctacttaga tccatacact tgaaaattgc acatttagtt 1561 ctactatctt ggtttaatgg actatagtag gtccaaatct tatttgaccg gagctgaccg 1621 ccgatgtggc attccacgta ggcaacacat ttacagccag ccccctgtag cagcgaagaa 1681 ttgcaatttg ccccttcgtt ctacggtacc accctagaac ccacgaaaaa gacgagggat 1741 tttgtgggtt tcaaggtggc actgtagcgc gaaggggcaa atcgtaattc ttaccccact 1801 catcttgaat cttcatgtca actgaagaat taatactgaa tcttggtgtg tgtgtttttg 1861 gttcagggac catcacgcag ctgttcggcg tgggggagag cgagtgctcc gtcatcttcg 1921 tgtgggtgta cgccctcgcc tccgtcgcgg tgacggtgtg gtcggcgttc ttcatgtgga 1981 cgctgtcgtg atagatcgat cgatcgatcg gacgccgcgt gccggcgtga ggaggtttca 2041 gggggttcag agacgacgac ggcgagacgt acggtgcgtt cctccggcga gacaggatgg 2101 agcgaccggg caagatgacg ccggcgagag ggcggcgcgg ctgctgctgc atcgcatttg 2161 cgtcgctgga gaagatgcaa cgcgacatct agctaaggca attcatggcg ttcgtgttcg 2221 ttgtctcatt ccgagcaaat aatgttgtga tttgtattac tatctgtaat tcggcgtgtg 2281 tgtttgccgc cacattttgg ctaaattaat cgatatttgg gccgggccgg gatggcccag 2341 gatccagcg //