LOCUS       AK073345                2349 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:J033028L15, full insert
            sequence.
ACCESSION   AK073345
VERSION     AK073345.1
KEYWORDS    CAP trapper; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 2349)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..2349
                     /clone="J033028L15"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     CDS             333..1472
                     /db_xref="Osa1:LOC_Os09g31478"
                     /db_xref="RAP-DB:Os09g0491740"
                     /note="(RAP Annotation release2) Auxin Efflux Carrier
                     family protein"
                     /note="(Rice Genome Annotation Project) auxin hydrogen
                     symporter, putative, expressed"
                     /note="mapping to R09-TIGRv4S1-000584R (Chr.9: short
                     arm=18977152, long arm=18982472, direction=reverse) for
                     TIGR Pseudomol ver4"
                     /protein_id="BAG93407.1"
                     /translation="MGLLELFITACVPVLNMLLVTGVGSFLATDFVGILNKDARKYLN
                     NIVFYVFNPSLVATYLAQTITLEGLAKLWFMPVNILLACTFGLILGWIVVHVTRAPAR
                     LRGLILGCCSAGNWGNIFLIIIPALCKEKGSPFGAPDVCHTYGLAYSSLSMALGAVFL
                     WTVAYNIMRATSKVADEGNARTNDTKVSNSGSSTGTASEENLSIPNDNNQCTLPLISN
                     SSVPSSKTKVTLSERAKRFVSSMFGAIDFKKIFAPSTIAVIIGFIIGGTPLIRNAIIG
                     ENAPLRVIHESADLIGGGAIPSVTLIMGGNLLNGLRGEASVQPSVIASVIVVRYILLP
                     SLGTLLVKSAVHLGLIHPDPLYQFILLLQYAVPPAMNIGRKERME"
BASE COUNT          572 a          552 c          601 g          624 t
ORIGIN      
        1 gtagcgagca atatatatat aatcttcagt gagaaaagcc tcagaaccac accctcgaga
       61 gcccgagctg gagaagaaga gaagaaaagg cggccacgga atcgtcggcc gccgccacct
      121 ccgccgccgg cgcagagctc cgccggtatc ggccaggtgg ctcttctcct ctctcggaat
      181 cgaaggcgag cgcgcgcttt aatttcttca tctccctcca tcttcttcat tggcggcggc
      241 ggcggcggtt ttgcggcggc gcgtgcaggc cagcaagaac gaagctaagg acagggaaca
      301 gtgactgctt gttgaactaa gctacaacaa tcatgggcct cctggagctc tttattacag
      361 catgtgtgcc ggttctgaac atgcttctgg ttactggtgt tggatcattc ctggcaactg
      421 attttgttgg catactgaac aaagatgcac ggaaatatct aaacaatata gtattttatg
      481 tatttaatcc atctcttgtt gcgacctatt tagcacaaac aatcacattg gaaggcttgg
      541 ctaaattgtg gttcatgcct gtgaatattc ttcttgcttg tacctttggg ttaatccttg
      601 gatggatcgt ggtacatgtc accagagcac cggctaggct aagaggcctc attttgggtt
      661 gctgttctgc tggcaattgg ggcaatattt ttctcatcat cattcctgct ctttgcaaag
      721 agaaaggaag cccgtttgga gcacctgatg tttgtcacac ttatggatta gcgtattctt
      781 cactctcaat ggctcttggt gctgtctttc tgtggactgt cgcgtataac attatgcgag
      841 ccacttcaaa agtggctgat gaaggtaatg ctcgaacaaa tgatacaaaa gtatccaatt
      901 cagggagcag tacaggaaca gcgtcagaag agaatttatc aatcccaaac gataacaatc
      961 aatgcacact ccctttgata tccaattcaa gtgtaccttc aagcaaaact aaggtcacat
     1021 tgtcagagag agcgaagcga tttgtatcat caatgttcgg agcaattgac ttcaagaaga
     1081 tctttgctcc ttcaaccatt gctgtgatta ttgggtttat aattggagga acgcctctaa
     1141 ttagaaatgc tattatcgga gaaaacgctc ctcttcgtgt cattcatgag tcagctgatc
     1201 taataggtgg aggagcaatt ccatctgtca cactgataat gggagggaac ctcctcaatg
     1261 gattacgagg agaagcaagc gtccagcctt cagtgatagc gagcgtaatc gtcgtcagat
     1321 acattcttct cccttcgcta ggcaccttgc tcgtcaaatc ggcggttcac ctgggcctca
     1381 tccaccctga tcccctctac cagttcatcc tattgcttca gtacgccgtg ccgccggcga
     1441 tgaacattgg taggaaagaa agaatggaat aatcttgaat acgtaaaata catggccggt
     1501 ccttaaactt gagagcaaat gctacttaga tccatacact tgaaaattgc acatttagtt
     1561 ctactatctt ggtttaatgg actatagtag gtccaaatct tatttgaccg gagctgaccg
     1621 ccgatgtggc attccacgta ggcaacacat ttacagccag ccccctgtag cagcgaagaa
     1681 ttgcaatttg ccccttcgtt ctacggtacc accctagaac ccacgaaaaa gacgagggat
     1741 tttgtgggtt tcaaggtggc actgtagcgc gaaggggcaa atcgtaattc ttaccccact
     1801 catcttgaat cttcatgtca actgaagaat taatactgaa tcttggtgtg tgtgtttttg
     1861 gttcagggac catcacgcag ctgttcggcg tgggggagag cgagtgctcc gtcatcttcg
     1921 tgtgggtgta cgccctcgcc tccgtcgcgg tgacggtgtg gtcggcgttc ttcatgtgga
     1981 cgctgtcgtg atagatcgat cgatcgatcg gacgccgcgt gccggcgtga ggaggtttca
     2041 gggggttcag agacgacgac ggcgagacgt acggtgcgtt cctccggcga gacaggatgg
     2101 agcgaccggg caagatgacg ccggcgagag ggcggcgcgg ctgctgctgc atcgcatttg
     2161 cgtcgctgga gaagatgcaa cgcgacatct agctaaggca attcatggcg ttcgtgttcg
     2221 ttgtctcatt ccgagcaaat aatgttgtga tttgtattac tatctgtaat tcggcgtgtg
     2281 tgtttgccgc cacattttgg ctaaattaat cgatatttgg gccgggccgg gatggcccag
     2341 gatccagcg
//