LOCUS AK073196 2157 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J033024M04, full insert sequence. ACCESSION AK073196 VERSION AK073196.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2157) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..2157 /clone="J033024M04" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..2157 /db_xref="Osa1:LOC_Os03g08060" /note="(Rice Genome Annotation Project) elongation factor 1-alpha, putative, expressed" /note="mapping to R03-TIGRv4S1-000297F (Chr.3: short arm=4096054, long arm=4098803, direction=forward) for TIGR Pseudomol ver4" BASE COUNT 475 a 533 c 551 g 598 t ORIGIN 1 gagccgccgc cgccgcagcc tcctcctctc gtcttctcct tcgaggtcag cttcagatct 61 tctctcttct ccatatttgc gcttgttcat gttcgttcgt agctgcagat ctggtttagt 121 aacgtgaggt ttcggtgatt tcgagctggg gcatgttgtg ttcgcccatt ttttgtaact 181 tttttctgtg tattcatctc actgcaatga tcttcgtctg ctgttcgttg acgcgacgat 241 aaacttgatt tgtcagtgaa tcatctgcat aggttgaaaa ttatcggcag aatcggacga 301 tgaacttgat ttggtgcaga atcatttaca taagttgaaa attatcggtg gaatcactag 361 aaggattttt atctacaatc cgttcgcata gatctctttc cgtgtttctg taattttttt 421 tattctacta ctgctgagta ggtgttatcg tctgtacccg gtttggttgg gtcgattact 481 gcgcctctgt gcaaatcatc cgccgattag ctgcgttagc acttttatag ctgcccaagt 541 ttgatctgtg agcttgcctg ctatatttat ttagagttgt aaattataca cttatctttg 601 tttctaatat ttgtttcgtt ctgtgctgca gttgttagct ccctccttat tcaaccatgg 661 gtaaggagaa gacgcacatc aacattgtgg tcattggcca cgtcgactcc ggcaagtcga 721 ccaccacggg ccatctgatc tacaagcttg gaggtatcga caagcgtgtg atcgagaggt 781 tcgagaagga agccgctgag atgaacaaga ggtccttcaa gtacgcgtgg gtgctcgaca 841 agctcaaggc cgagcgtgag agaggtatca ccattgatat cgccctgtgg aagttcgaga 901 ccaccaagta ctactgcacg gtcatcgatg cccctggtca ccgtgacttc atcaagaaca 961 tgatcacggg tacctcccag gctgactgtg ccgtgctcat cattgactcc accactggtg 1021 gttttgaggc tggtatctcc aaggatggcc agacccgtga gcacgctctt cttgctttca 1081 ctcttggagt gaagcagatg atctgctgct gcaacaagat ggatgccacc actcccaagt 1141 actccaaggc ccgttatgat gaaatcgtga aggaagtctc atcctacctg aagaaggtcg 1201 gctacaaccc tgacaagatt ccctttgttc ccatctctgg gtttgagggt gacaacatga 1261 ttgagaggtc caccaacctt gactggtaca agggccccac cttgcttgag gctcttgacc 1321 agatcaacga gcccaagagg ccatcagaca agcccctacg tcttcccctt caggacgtgt 1381 acaagatcgg cggtattggt accgtgcctg tgggtcgtgt tgagactggt gtcctcaagc 1441 ctggtatggt ggtgaccttt ggtcccagcg gtctgaccac tgaggtcaag tcggttgaga 1501 tgcaccacga ggctctccag gaggctcttc ctggtgacaa cgttgggttc aacgtgaaga 1561 acgttgccgt gaaggatctg aagcgtgggt acgtggcctc taactccaag gatgaccctg 1621 ccaaggaggc tgccagcttc acctcccagg tgatcatcat gaaccaccct gggcagatcg 1681 gcaatggcta cgccccagtg ctggactgcc acacctcaca cattgccgtc aagtttgctg 1741 agctggtgac caagatcgac agacgatccg gcaaggagct ggagaaggag cccaagttcc 1801 tcaagaacgg tgatgctggt atggttaaga tgattcccac caagcccatg gttgtggaga 1861 ccttctctga gtaccctcct cttggtcgtt ttgccgtgcg tgacatgagg caaacggtgg 1921 ctgttggcgt catcaagaac gtggagaaga aggacccaac cggtgccaag gtgaccaagg 1981 ctgccgccaa gaagaaatga gcatcgttga agtggtggtt atgctggctg catttgagat 2041 atcttagcgt tcgttaagtt ttgcccacag ccatggcact cgttgcatgg accgttaata 2101 tctgctcgca atgtgcacta tgttagtcgt ttaaaactcg tttatttcta ttcggtt //