LOCUS AK073179 2507 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033004F21, full insert
sequence.
ACCESSION AK073179
VERSION AK073179.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2507)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2507
/clone="J033004F21"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 875..2302
/db_xref="Osa1:LOC_Os06g49010"
/note="(Rice Genome Annotation Project) squamosa
promoter-binding-like protein 11, putative, expressed"
/note="mapping to R06-TIGRv4S1-001150R (Chr.6: short
arm=29702628, long arm=29707262, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG93329.1"
/translation="MASFGMNWNQKSPVFWDWENPAPFGPNTMENPKSIPHPEPRGVV
VAAANHGSTNSSGGTFTSSSELANGSSKSSLSASFDSSSKLGNSLEFRFASVKGHGKN
MCKDGEAGRVEDSGTSPAVAVSHGEPVIGLKLGKRTYFENVCGGQNVKSSSAASGVTC
PSTVVKKMKVSQQSTQSSYCQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLER
RFCQQCSRFHGLAEFDQKKKSCRRRLSDHNARRRKPQQEAISFGSSRLATMFYDARQQ
TDIYFGQSPFGQVRSNAISSCDNLGGFKFTEAKLPWMKPMKTIGLEDLNFSTLQMPGN
VVSHTVHHHDFDGLIPFKGNTPKVLNQGVDPACAVVSSNSNGAPDLRRALSLLSSDSW
GPADVQAGSQVHPGGVMPPLAVAAATVTAPTNPVSVMHALHPSTGGGGFWQDGDDPPP
LDHASQAQAFMHPGNGSSSGYGHLH"
BASE COUNT 591 a 566 c 656 g 694 t
ORIGIN
1 gatagtcact actcactaca ctaccagttg gtgtttgttc tgagcattat tggagtgtca
61 gggaagggca tgtgcttttg ttggttgctg taggaggagg cagccatcca ctgggcctca
121 ctctcctctt gttgctgcct cctcctcttg ttactgttca gtctcaggct ctcaggctca
181 caggtggggt tttgggagat actagttagg agggaaaggt tgccatcttg tgtgtgttgg
241 atctttaata caacggggat aacgattctc tctcagctaa aggaggtgag attcttggtt
301 tcacatcaag tattattgtt ctttctttta cttccttcaa aatagtttct ttgcttttta
361 tttcatatat ggtttggttt atttatgctc cccaacaagc aactggttca tgtgcggtaa
421 caaggagcaa ataatgcagc tctgattgac ttggggtagt tgttgtggtg atagattgga
481 aagggtttaa atagcgggtg gttgtggtga tgaatggggg ccagccttga tggggttgat
541 gctgtcgtct tttaggtcgg ggaaacaagt gggataggat ctccctcaag tcgaggtgag
601 tgagaactca gccaagaaca acaatggagt ctctgttgct ttagttctgc cagccaattg
661 gtttcaactt tcaacgctgc tacttgttat tcatcacctc ctcggatcgg tttgatttat
721 gctcaaggtt gtgctatgca tggtcatgct gattgagggc aagatttgca gggagaggaa
781 ggatccactg tgtttctttt ctgggagaaa ggaaagttga gatttgcaat atatacaagt
841 gtgagcagca gcagttgaga tccttaattc agccatggct tcttttggga tgaactggaa
901 tcagaagagc cctgtgtttt gggactggga aaatccagcg cctttcggtc cgaatacaat
961 ggaaaatccc aagagcatac ctcaccctga accaagaggt gtagttgtcg cggccgcaaa
1021 tcatggatcc accaattcat ccggtggcac gttcacttct agctcggagc tagccaatgg
1081 ttcatcgaag agctccttgt cagcgtcgtt cgattcctca tccaagctgg ggaacagctt
1141 agagttcagg tttgcttctg tcaaagggca tggcaagaac atgtgcaagg atggcgaggc
1201 cggtagagtt gaagactcgg gcacttctcc agctgtggca gttagccatg gtgagccggt
1261 aataggactc aagttaggga agagaactta ctttgaaaat gtttgtggag ggcagaatgt
1321 caagagctcc tctgcagctt caggtgtgac ttgtccatct actgtggtca agaagatgaa
1381 ggtgtctcag cagagcacac aaagctcata ctgccaagtt gaaggctgca aagtcgatct
1441 gtcctccgca agagaatacc atcgcaagca caaagtttgt gaagctcatt ctaaggcacc
1501 aaaggttatt gtttctggtc tggagcgccg tttttgccaa cagtgtagtc ggtttcatgg
1561 tttagctgaa tttgaccaga aaaagaaaag ttgccgcagg cgtctatctg atcataatgc
1621 acgaagaagg aaaccgcaac aagaggcaat ttcatttggt tcatcaaggc tcgccacgat
1681 gttttacgat gcaaggcagc agacagatat ttactttggc caatctcctt ttggccaagt
1741 gagaagcaat gcaatttctt catgtgacaa cctgggaggc ttcaaattta cagaagcaaa
1801 actcccctgg atgaagccaa tgaaaactat aggccttgag gatctgaatt tctctaccct
1861 gcagatgcca ggcaatgttg tgtcgcatac ggtgcatcat catgattttg atgggctcat
1921 accattcaag ggaaacaccc cgaaggtcct caaccaaggt gtggatccag cctgtgccgt
1981 cgtgtcctcc aactcgaatg gagccccgga tcttcggcgt gctctctctc ttctgtcaag
2041 cgattcctgg ggcccggccg acgttcaggc cggctcccag gtgcatcccg gtggagtgat
2101 gccgcccctc gccgttgccg ccgccaccgt caccgccccg acgaaccctg tcagtgtgat
2161 gcatgctctg cacccgtcca ccggaggagg aggattctgg caagacggcg acgacccgcc
2221 tccgctcgat catgcctcgc aggctcaggc gttcatgcat cctggcaatg gcagcagctc
2281 cggctatggc catctgcact gattctgctg catctatttg gaacgggttg atgactggtt
2341 actccgttca tgatcttacc ctgtcagtga tggactctga ataatttggg ggcgaattgt
2401 cctgcaaccc caggatttat tatttctatt tttgaaacca aaccaccagg atatttgcca
2461 ttggatgaga agtgttcatg atcatgaaat gatctgtttt gttccac
//