LOCUS AK072682 1857 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023135B15, full insert
sequence.
ACCESSION AK072682
VERSION AK072682.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1857)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1857
/clone="J023135B15"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 202..1383
/db_xref="Osa1:LOC_Os10g21560"
/db_xref="RAP-DB:Os10g0359500"
/note="(RAP Annotation release2) No apical meristem (NAM)
protein domain containing protein"
/note="(Rice Genome Annotation Project) no apical
meristem protein, expressed"
/note="mapping to R10-TIGRv4S1-000247R (Chr.10: short
arm=10704294, long arm=10709217, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG93097.1"
/translation="MSSKVPGLALLNTSISKFWSDEELVRFLAERKEAHSLPENVFVG
MNISLIDPRNSEDIWYMNFSDDPQSPKNGENAIIKSKTGYWKVVGTVRIPTSTVIVGM
KVSLDHYEGEAPSGKRTGWVMDEYLIEQNDEANLPQDYKNLCTIFFQGDDILNAGDKQ
ICLNANVPNERKEFYLQYLAELEEQNAAWSNQAVSVNEQDVSSSKGLDGQKTSAADDQ
SVNHAPSREGYIELNDFLNSDSSASTSEYSSQRTMISEEYFDSDAFLREIRNDHNAAD
EEHTDSKFSVAAASKSDCVVISPPEQGFVNNLDNHATIAGDSPQKSVKNDKVDEHSSE
EHPQHSPTTSCFPSHVKRSLSSSSSSSQGTSNSKSPQRQRERSTKKIGKLGKYWCCGS
L"
BASE COUNT 550 a 395 c 422 g 490 t
ORIGIN
1 gacccgctcg cgcaattcgc acgctctcct cgcctcgcct cgccttctct tctctcctca
61 cctcgcccgc gtcgtcgtcg tcgtcgtctc cgcggcggcg ggggaagcag cgggaggcgg
121 aggcggagca gcagcagcac caccaccccg gggcggggcc gcggcgcggt gctcgcgcgc
181 gtcgactccg tgtggacaat catgtcttct aaagttcctg ggttagcatt acttaacacc
241 agcataagca aattttggag cgatgaggag cttgtccgat tcttagcaga gaggaaagaa
301 gcacactctc tgccagagaa tgtatttgtg ggaatgaaca tttctctcat tgatccacgt
361 aactcagagg acatatggta catgaatttt tcagatgatc cacaatcccc taagaatgga
421 gaaaatgcta ttataaagtc aaaaaccgga tactggaaag ttgttggcac tgttagaata
481 ccgacaagta ctgttattgt gggtatgaaa gtttctctgg accattatga aggcgaagca
541 ccatctggta agagaactgg gtgggtgatg gatgaatatc tgattgaaca gaatgacgaa
601 gctaatctac cacaggacta caagaatttg tgtacaatat tctttcaggg agacgacata
661 ttaaatgctg gagataagca gatatgtctg aatgcaaatg ttcctaatga acgcaaggaa
721 ttttaccttc aatatcttgc tgaactagaa gagcaaaatg ctgcatggag caaccaggct
781 gtatctgtaa acgagcaaga tgtctcttcc agcaaaggac tggacgggca aaaaactagt
841 gctgctgatg accaatctgt taatcatgcc ccttctaggg agggctacat agaattgaat
901 gacttcttaa actcagattc gtccgcatca acttcggaat actcaagtca acgcactatg
961 atttctgaag agtacttcga ttctgatgca tttctgaggg agattaggaa tgaccataac
1021 gcagctgatg aagaacatac agacagcaag ttcagcgtag ctgcagctag taaatcagat
1081 tgcgtggtta tcagtccacc tgaacaaggg tttgttaaca atctcgataa ccatgccacc
1141 atagctggag attcaccgca aaagtcagtg aaaaatgata aagtagacga acactcaagt
1201 gaggagcatc cacagcacag tcctacaact tcctgtttcc caagtcatgt gaaacgaagc
1261 ctttctagta gttccagtag ctctcagggt accagcaaca gcaagtctcc ccagagacag
1321 agagagcgat ctaccaaaaa aattggaaaa ttaggaaagt actggtgttg tggatcatta
1381 tagtccattg catagcattt ctatactctg tacaggaagc atgacattac gccatgctat
1441 tttgatacgg actggtcgcc tcaacagatt tatgccagat cttctgatag aacatagtca
1501 aagaagactg caagttttga agcaacaatg accaacaata ctacaaactg tggaaagtta
1561 catttttgtt ttgttcatag tgtgaagata tcatgacctt gatgattctg tcaaactgaa
1621 gtgagctacc ttgattccat tcttgattga tagggtcaga tattcactga tacctgtgtt
1681 agttcagtga aatgaggatg gcagtagttt ctgattatca ccaggtgctc tcatttgtaa
1741 acatctacag tacagtttca tatgatagaa tttcacattt tagtaagtac taatactgat
1801 tgctcaatac ttagttatcc tgcttgcatt tgaaggagta taagcttttg atttacg
//