LOCUS       AK072648                1760 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:J023126K23, full insert
            sequence.
ACCESSION   AK072648
VERSION     AK072648.1
KEYWORDS    CAP trapper; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1760)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..1760
                     /clone="J023126K23"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     CDS             95..1438
                     /db_xref="Osa1:LOC_Os03g08010"
                     /note="(Rice Genome Annotation Project) elongation factor
                     1-alpha, putative, expressed"
                     /note="mapping to R03-TIGRv4S1-000294F (Chr.3: short
                     arm=4073679, long arm=4076672, direction=forward) for
                     TIGR Pseudomol ver4"
                     /protein_id="BAG93078.1"
                     /translation="MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEK
                     EAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNM
                     ITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP
                     KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLE
                     ALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTE
                     VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVII
                     MNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKM
                     IPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVTKAAAKKK"
BASE COUNT          390 a          471 c          456 g          443 t
ORIGIN      
        1 gcctctccca tctcaccccg ccgccgccgc cgccgcagcc tcctcaaggc tgctcccatc
       61 ctctccttcg agttagcttc ctccttattc aaccatgggt aaggagaaga cgcacatcaa
      121 cattgtggtc attggccacg tcgactccgg caagtcgacc accacgggcc atctgatcta
      181 caagcttgga ggtatcgaca agcgtgtgat tgagaggttc gagaaggaag ccgctgagat
      241 gaacaagagg tccttcaagt acgcgtgggt gcttgacaag ctcaaggccg agcgtgagag
      301 aggtatcacc atcgatatcg ccctgtggaa gttcgagacc accaagtact actgcacggt
      361 catcgatgcc cctggtcacc gtgacttcat caagaacatg atcacgggta cctcccaggc
      421 tgactgtgcc gtgctcatca ttgactccac cactggtggt tttgaggctg gtatctccaa
      481 ggatggccag acccgtgagc acgctcttct tgctttcact cttggagtga agcagatgat
      541 ctgctgctgc aacaagatgg atgccaccac tcccaagtac tccaaggccc gttacgatga
      601 aatcgtgaag gaagtctcat cctacctgaa gaaggtcggc tacaaccctg acaagattcc
      661 cttcgttccc atctctgggt ttgagggtga caacatgatt gagaggtcca ccaaccttga
      721 ctggtacaag ggccccacct tgcttgaggc tcttgaccag atcaacgagc ccaagaggcc
      781 atcagacaag cccctgcgtc ttccccttca ggacgtgtac aagatcggtg gtattggcac
      841 cgtgcctgtg ggtcgtgttg agactggagt cctcaagcct ggtatggtgg tgacctttgg
      901 tcccagcggc ctgaccactg aggtcaagtc ggttgagatg caccacgagg ctctccagga
      961 ggctcttcct ggtgacaacg tcgggttcaa cgtgaagaac gttgcggtga aggatctgaa
     1021 gcgtgggtac gtggcctcca actccaagga tgaccctgcc aaggaggctg ccagcttcac
     1081 ctcccaggtg atcatcatga accaccctgg ccagatcggc aacggctacg ccccagtgct
     1141 ggactgccac acctcccaca ttgccgtcaa gtttgctgag ctggtgacca agatcgacag
     1201 acgatctggt aaggagctgg agaaggagcc caagttcctc aagaacggtg atgctggtat
     1261 ggttaagatg attcccacca agcccatggt tgtggagacc ttctctgagt accctcctct
     1321 tggtcgtttt gccgtgcggg acatgaggca aacggtggct gttggcgtca tcaagaacgt
     1381 ggagaagaag gacccaaccg gtgccaaggt gaccaaggct gccgccaaga agaaatgagc
     1441 ctcgttcaag tggtgctttc catatctgca tttgagatat ctagctcttt tagtactcgt
     1501 taagttttgt cgacggtcat ttcagttgtt gcattgaccg ttaatatctg ctcgctttgt
     1561 gcactatgtc agtcatttaa aactctattt tctgttcggt ttaaacttgg atgttaagac
     1621 ttattattgc ccttcgactg ttgtggaatg cgagtataca ttgctaattc ctttgtcttt
     1681 attttcgctt gtgctattcg ctgtttctgc tgctattgga tactggatcg tcttcctgtt
     1741 aatgaaaagt gaactttttg
//