LOCUS AK072648 1760 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J023126K23, full insert sequence. ACCESSION AK072648 VERSION AK072648.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1760) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1760 /clone="J023126K23" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 95..1438 /db_xref="Osa1:LOC_Os03g08010" /note="(Rice Genome Annotation Project) elongation factor 1-alpha, putative, expressed" /note="mapping to R03-TIGRv4S1-000294F (Chr.3: short arm=4073679, long arm=4076672, direction=forward) for TIGR Pseudomol ver4" /protein_id="BAG93078.1" /translation="MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEK EAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNM ITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLE ALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTE VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVII MNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKM IPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVTKAAAKKK" BASE COUNT 390 a 471 c 456 g 443 t ORIGIN 1 gcctctccca tctcaccccg ccgccgccgc cgccgcagcc tcctcaaggc tgctcccatc 61 ctctccttcg agttagcttc ctccttattc aaccatgggt aaggagaaga cgcacatcaa 121 cattgtggtc attggccacg tcgactccgg caagtcgacc accacgggcc atctgatcta 181 caagcttgga ggtatcgaca agcgtgtgat tgagaggttc gagaaggaag ccgctgagat 241 gaacaagagg tccttcaagt acgcgtgggt gcttgacaag ctcaaggccg agcgtgagag 301 aggtatcacc atcgatatcg ccctgtggaa gttcgagacc accaagtact actgcacggt 361 catcgatgcc cctggtcacc gtgacttcat caagaacatg atcacgggta cctcccaggc 421 tgactgtgcc gtgctcatca ttgactccac cactggtggt tttgaggctg gtatctccaa 481 ggatggccag acccgtgagc acgctcttct tgctttcact cttggagtga agcagatgat 541 ctgctgctgc aacaagatgg atgccaccac tcccaagtac tccaaggccc gttacgatga 601 aatcgtgaag gaagtctcat cctacctgaa gaaggtcggc tacaaccctg acaagattcc 661 cttcgttccc atctctgggt ttgagggtga caacatgatt gagaggtcca ccaaccttga 721 ctggtacaag ggccccacct tgcttgaggc tcttgaccag atcaacgagc ccaagaggcc 781 atcagacaag cccctgcgtc ttccccttca ggacgtgtac aagatcggtg gtattggcac 841 cgtgcctgtg ggtcgtgttg agactggagt cctcaagcct ggtatggtgg tgacctttgg 901 tcccagcggc ctgaccactg aggtcaagtc ggttgagatg caccacgagg ctctccagga 961 ggctcttcct ggtgacaacg tcgggttcaa cgtgaagaac gttgcggtga aggatctgaa 1021 gcgtgggtac gtggcctcca actccaagga tgaccctgcc aaggaggctg ccagcttcac 1081 ctcccaggtg atcatcatga accaccctgg ccagatcggc aacggctacg ccccagtgct 1141 ggactgccac acctcccaca ttgccgtcaa gtttgctgag ctggtgacca agatcgacag 1201 acgatctggt aaggagctgg agaaggagcc caagttcctc aagaacggtg atgctggtat 1261 ggttaagatg attcccacca agcccatggt tgtggagacc ttctctgagt accctcctct 1321 tggtcgtttt gccgtgcggg acatgaggca aacggtggct gttggcgtca tcaagaacgt 1381 ggagaagaag gacccaaccg gtgccaaggt gaccaaggct gccgccaaga agaaatgagc 1441 ctcgttcaag tggtgctttc catatctgca tttgagatat ctagctcttt tagtactcgt 1501 taagttttgt cgacggtcat ttcagttgtt gcattgaccg ttaatatctg ctcgctttgt 1561 gcactatgtc agtcatttaa aactctattt tctgttcggt ttaaacttgg atgttaagac 1621 ttattattgc ccttcgactg ttgtggaatg cgagtataca ttgctaattc ctttgtcttt 1681 attttcgctt gtgctattcg ctgtttctgc tgctattgga tactggatcg tcttcctgtt 1741 aatgaaaagt gaactttttg //