LOCUS AK072617 2829 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023127G03, full insert
sequence.
ACCESSION AK072617
VERSION AK072617.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2829)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2829
/clone="J023127G03"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2829
/db_xref="Osa1:LOC_Os06g03700"
/db_xref="RAP-DB:Os06g0127700"
/note="(RAP Annotation release2) Similar to Oligopeptide
transporter 7 (AtOPT7)"
/note="(Rice Genome Annotation Project) oligopeptide
transporter 9, putative, expressed"
/note="mapping to R06-TIGRv4S1-000078F (Chr.6: short
arm=1458768, long arm=1463333, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 706 a 719 c 656 g 748 t
ORIGIN
1 tgggcacagc tcccaactcc tcccattatc catccatggc gtcctcccat caccaagaag
61 tacaagagca aggccatgga gatggagagg aagaggaaca agataatagc caaatcacct
121 ctccactgtt gcgatcctca atgcggctcg gctcgccgga ggagaactcg ccggtggagc
181 aggtggcgct gacggtgccg gtgggggacg acccggcgac gccggtgctg acgttccgga
241 tatgggtgct gggcacggcg tcctgcgtcg tgctgtcctt cctcaacacc ttcttctggt
301 accgcaagga gccgctcacc gtcacggcca tctcggcgca gatcgccgtc gtgccgctcg
361 gccgcctcat ggccgccgcg ctgccggagc gcgtcttctt ccgtggccgg ccgtgggaat
421 tcaccctcaa ccctggcccg ttcaacgtca aggagcacgt gctcatcacc atcttcgcca
481 acgccggtgc cggttccgtc ttcgccatta acgtcatcac cgccgtccga gtcttctacg
541 ggaagcgcat ctccttcttc gtctccctcc tcgtcgtcct caccagccag gtgctgggat
601 tcgggtgggc gggaatattc cggcggtatc tggtggagcc ggcggcgatg tggtggccgt
661 ccaacctcgt gcaggtctcc ctcttcaggg cacttcatga aaaggaacgg aggagcaaag
721 gcggcatgac acgcacccag ttcttcttgg tagcatttgt gtgcagcttt gcctactaca
781 ttttcccagg ctacctattc cagatgctca cttccctctc ctggatttgt tggatctttc
841 ccaaatctgt gctcgcacaa cagcttggat caggtctcca tggccttggc attggtgcaa
901 ttggactcga ctggtcatcc atctcgtcat atctcggaag cccactggct agcccatggt
961 ttgccactgc caacattgct gccggcttct tcatctacat ttatgtaatc acaccaatcg
1021 cctactggat taatctctac aaggcacaaa acttccctat cttttcagat ggccttttca
1081 cagtgactgg acagaagtac aacatctcta ccattataga ctcacagttt cattttgata
1141 caaaagccta tgagaagaat ggaccattat acatcagcac cttcttttct atcagctatg
1201 gtcttggttt tgcatgtctt actgcaacag ttgtccacgt tcttcttttc catggaagtg
1261 aaatttggca gctaagcaga tcagcttttc aagataaaaa gatggacata catacaaagc
1321 ttatgaagag gtacaaacag gttcctgaat ggtggttcat ctccatcctt atagccagtg
1381 ttgcaatcac catgttcact tgtgagtatt acatagaaca attgcagtta ccctggtggg
1441 gggtactact tgcatgtgcc cttgcaattt tcttcaccct tccaattgga atcgtcacag
1501 caacgacaaa ccagactcca ggcttgaata tcatcacgga atacatcatg gggtacttgt
1561 atcctggacg acctgtcgca aacatgtgct tcaaggtata tggttacatt ggcccacagc
1621 aagccctagc attcctacaa gattttaagc tgggacacta catgaagatt ccaccaagga
1681 ccatgtttat ggctcaggtg gtgggcactt tgatagcagc atttgtgtac cttggaacag
1741 catggtggct catggataca atccctaaca tatgcaacac cgagctcctc cccccaggca
1801 gcccttggac ctgcccttat gatcatttat tctatgatgc atcagtcata tggggcctta
1861 tgggcccacg cagaatattg ggtgatttag gcacttattc tgctgtcaac tggttcttct
1921 tggggggtgc catggctccc ctcctcgtct ggtttgcaca caaggcattc ccaagtcaga
1981 aatggatcct acttgtcaac atgccctgtg ctgatcgccg gaatcagcca gatgcctcct
2041 gccacttcag gtcaactaca cggcatggat atttgtagca tttttgtcag gttatgtggt
2101 ctataagtac cgtcgtgact ggtgggagag acaccattat ctactttcag gtgcccttga
2161 tgctggtttg gcattcatgg ctgtcttgct atatttatgc ctaggagtag agaaaatcag
2221 tttgaactgg tggggtaatg atttggatgg ttgtccatta gcttcttgcc ccattgcgga
2281 aggtataact gtacaggggt gtccagtggc aagtgcatag ccaagtttct tctcatacac
2341 agtaccgccg gcaatggtat ctcaatcatc ttaaggagga tgcaaagatc aaagaaccat
2401 gcagagaggc tttaaacaac tcaaaatgaa gaccaaaaag aaaatgtcca tatgttacaa
2461 ggaagatgat actacaaggt gtaccgaata caaaaataag taaagttatt tggtgcatgc
2521 taaattgttg ccggtgacag aaaacagatt atgataatag atgaactgaa tttctgaaac
2581 caacactgaa ttgaaagaca gtagccatcg tccatagaaa tagttaaagt ctgaacatga
2641 ttccacttac ctgtaaaggt aacatcagga tcaccttagc ctttaatcat cacaagaacc
2701 ttgcaggaaa aagtaagaaa ttcagatgtt acttttgctt tgagggaaaa tgaaacaata
2761 cggtcagcat gtaatcctgt atgaaacatg gataatataa actgcattat atattgtttc
2821 attggaagt
//