LOCUS AK072614 1495 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023133K03, full insert
sequence.
ACCESSION AK072614
VERSION AK072614.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1495)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1495
/clone="J023133K03"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1495
/db_xref="Osa1:LOC_Os06g34040"
/note="(Rice Genome Annotation Project)
4-methyl-5-thiazole monophosphate biosynthesis protein,
putative, expressed"
/note="mapping to R06-TIGRv4S1-000732R (Chr.6: short
arm=19823562, long arm=19828596, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 355 a 383 c 393 g 364 t
ORIGIN
1 gactcttctt cctcccctcc gcttctgctc ccctctcaaa accccacctc cctctcctcc
61 tcctcctcac ctccgccgcc tccaaaccct aacccgcgcg ctcgcctcct cctcctcagc
121 catggcgtcg ccgcccgcga agaaggtgct ggtgccgatc gcgagcggga cggagccgat
181 ggaggccgtc atcaccgtcg acgtgctccg ccgcgccggg gccgacgtct ccgtcgcctc
241 cgtcgacccc ggctccgcgc aggtcggcgg agcctggggc gtcaagctgg ccgcggacgc
301 gctgctcgac gacctcgccg acgccgaatt cgacctcatc tcgctcccgg gaggtatgcc
361 agggtcttcc aatcttagag actgcaaact tctggagaac atggttaaaa agcacgcagg
421 aaagggcaaa ctttatgctg caatatgtgc tgcaccagct gtcgctctag gatcatgggg
481 tttgctgaat ggattgaagg caacttgtta tccttcattc atggataaac ttccttcaga
541 ggtcaatgct gtagaatcga gggtgcagat tgatgggaac tgtgtgacca gtcgaggacc
601 aggaacggcc atggagtatt ctgttgtttt ggtcgaacaa ttatatggca aagaaaaagc
661 tgatgaagtt gctggtccaa tggtcatgcg cccccagcat ggtgtggagt tctcattgaa
721 agagttgaat tcaactagtt ggaatgttgg tgaaacacct cagattcttg taccaattgc
781 taatgggaca gaggagatgg aagcaactat gataatcgac atcctcagaa gggcgaaagc
841 aaatgttgtc gttgcgtcct tggaggaaac tttggagatt gttgcatcca ggaaagtgaa
901 gatggttgct gatgttctgt tggatgatgc tcttaagcag caatatgatc tcattttgtt
961 accaggtggt cttggtggtg cccaagcata tgcaaagtca gataaactga ttggtctgat
1021 caagaagcaa gctgaggcaa acaagctata tggagctata tgtgcctcgc cagcaatcgc
1081 ccttgaacca catggcctgc tgaagggaaa gaaggctaca tcctttcctg gtatgtggaa
1141 caagctctcg gaccaaagcg aatgcaagaa cagggttgtc gttgatggca acctaatcac
1201 cagccaaggt ccaggcacat ccatggagtt ctctctcgcc atcgtggaga agctgtttgg
1261 tcgggagagg gccgtcgagc tcgccaaaac catggtcttc atgtgagttg tgttgttaca
1321 tactacgtgt aagacaacac catagtcaga ctctgaatat gaggcatcct tttgctcgta
1381 gctggtgtgg tggaaagcac ttcgtaatcc ttttttttgg ctttctcttc cacaataaca
1441 cgacgtcttg ttatgtgtac aaccgtacaa atgcaataaa aagagatgga tattg
//