LOCUS AK072608 2599 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023134K04, full insert
sequence.
ACCESSION AK072608
VERSION AK072608.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2599)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2599
/clone="J023134K04"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2599
/db_xref="Osa1:LOC_Os08g23130"
/note="(Rice Genome Annotation Project) oligopeptide
transporter 5, putative, expressed"
/note="mapping to R08-TIGRv4S1-000403R (Chr.8: short
arm=13804750, long arm=13809271, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 479 a 818 c 780 g 522 t
ORIGIN
1 gagcaaggcg agcagaattt cagaagctga cgaggaaaac agaacaaaac aggggagaaa
61 caagcctaca gatgatggct cggtctatcc cgccggagtc cggtgacgag aacgtctcgg
121 cttctgccga tggcggccta ttttagggac agaagatgac aaaagaacat caaggaagag
181 ggcgtacgtg tagagaaaga cggtgaaata ttttgccagc cagccggccg gccggagtcc
241 gacgatcgag cacattccga tggacactgc aggcggtaca acaaaccacg cctaaaacct
301 cctttactta ggagggcatg gaggaggagg tgaacgacca cccgatcgag gaggtccgga
361 acacggtgcc ggtgaccgac gacccgtcgg agccgtgcct gacgttccgg gtgtgggtgc
421 tggggctctc gtcgtgcgtg ttcctcgcct tcgtcaacga gttcttcatg taccggacca
481 cgcagctgag catcggcacg gtggtggtgc aaatcatcac gctgcccatc ggccgcctca
541 tggcgtcgac gctgccggcg aggcgcctcc gcgtcggcgg ctggtccttc tccctcaacc
601 cggggccctt cagcctcaag gagcattgcc tcatcatcat cttcgccggc gccggcgcca
661 gcggcgtcta tgccatgaac atcatcgcca tcgtcaaggt gttctacaag cgccagatca
721 gcccctacgc cgccatgctg ctcgcccaga ccacccagtt gcttgggtat ggatgggccg
781 gattgttcag gaagtacctg gttgactcag cctacatgtg gtggccgtca aacctcgtcc
841 aagtcaccct cttcagggcg atgcacgagg aggagaagag gaacaagggg cagctgacgc
901 ggctgcagtt cttcatcatg gtgatgacgt gcagcttcgc ctactatatc gtacccagct
961 acctgttccc ggcgatcagc accatctcgg tgctgtgctg gctgtacagg gactcggtga
1021 cggcgcagca gatcggctcc ggcgcctcgg gcctcggcgt cggctccttc ggcctcgact
1081 ggaacaccgt ggtgggcttc ctcggcaacc cgctggcgtc gccggcgttc gccatcttca
1141 acgtcatggc cggcttcgcg ctcagcacct acgtcgccgt gccgatcctc tactggaccg
1201 acacctacaa cgccaaacgc ttcccgctcg tgtcgtcgca cgtcttcaac gccgccggcg
1261 gccgctacga caccgcccgc atcctcgacc cggccacctt cacgctcaac ctcagggagt
1321 acgacgccta cggccgcatc aacctcagca tcctcttcgc catcaactac ggcatcggct
1381 tcgcgggcct catgtccacg ctctcccacg tcgcgctcta ccacgggaca tttggggctt
1441 gtggcggaag gcaacggcgg agcaggcgaa cggcggcggc aaggagcgcc aagacgtgca
1501 cacgagaatc atgaagagga actacaaggc cgtgccacag tggtggtttc acttgatgct
1561 ggccatcgtg atggcattgt cgctgtacac ctgtgagggg tttggccggc agcttcagct
1621 gccatactgg ggtctcctcc ttgcctgtgc catcgccttc accttcacgt tgcccatcgg
1681 cgtcatctct gccacgacca acatgcaacc agggttaaac atcatcacag agctcatcat
1741 cgggtacctg tacccgggga agccattggc gaatgtggtg ttcaagacct acggctacat
1801 aagcatgact caggcgctga cgtttgtgtc ggatttcaag ctggggcact acatgaagat
1861 accgcccagg tccatgttca tggtgcagct ggcagggacg gtggtggcgt cgacggtgca
1921 cttcgcgacg gcgtggtggc tgctgacgac ggtgaggaac atctgcgacg tggacagcct
1981 gccgctgggg agcccgtgga cgtgccccgg cgaggacgtc ttctacaacg cctccatcat
2041 ctggggcgtc gtcggaccgc tccggatgtt tggccgtctc ggcaactact ggcagatgaa
2101 ctacttcttc ctcgtcggcg tcctcgcgcc ggtgcccgtc tggctgctgt cgcgccggta
2161 cccgcgcagc gcgttgctcc gggacatcaa cctgccgctc gtcctcgccg gcgccagcgg
2221 gctgctcccg gcgaggtccg tcaacttcgt catgtggggg ctcgtcgggt tcgtgttcaa
2281 ccacgtcgtg taccgccggt gcagggcgtg gtggatgcgg cataactacg tgctcgccgc
2341 ggggctcgac gccggcgtcg ccttcatggg cgtgctcacc ttcgtctcgc taggatactt
2401 cgacatatac ggggtgcagt ggtggggtgg cgccgccgat gatcactgcc ccttggcgtc
2461 gtgccccaca gcacctgggg tgtttgccag gggatgcccg cctgtacctt cttgattgat
2521 caggacaccg catctacatg tatatactcc atatgacaga tggttactca aatgtatata
2581 ttatatcctc ttgtcttcc
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