LOCUS AK072583 2078 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023132G06, full insert
sequence.
ACCESSION AK072583
VERSION AK072583.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2078)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2078
/clone="J023132G06"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 197..1543
/db_xref="Osa1:LOC_Os06g38510"
/db_xref="RAP-DB:Os06g0583900"
/note="(RAP Annotation release2) Similar to Pectate lyase
homolog (EC 4.2.2.2) (Fragment)"
/note="(Rice Genome Annotation Project) pectate lyase
precursor, putative, expressed"
/note="mapping to R06-TIGRv4S1-000744F (Chr.6: short
arm=22820120, long arm=22822392, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG93046.1"
/translation="MEVLIRWSKLPAAGSLVLYAVFLLLSAAATSEANIGEYDEYWQK
RKLMADAAAEATYKRDPFEVTNSFNRAVHRSEEESGRRELAMTKRKKFAGPCKATNPI
DRCWRCRADWVTDRKRLARCAQGFGRNTTGGLAGKFYLVTDGTDDDVENPRPGTLRWG
VIQDEPLWIIFAKDMIINLKEEMMINSDKTIDGRGAQVRITNGAQVTVQNSNNVIIHN
IHIHDILQGKGGMIRDSPEHFGFRTQSDGDGISIFGSTNVWLDHLSLSNCQDGLIDVI
AKSTGVTISNCHLTNHNDVMLFGSSDSFSEDQIMQITVAFNHFGRGLVQRMPRCRWGF
FHVVNNDYTHWLMYAIGGSKNPTIISQGNRYIAPPNLAAKRITKQLGATEEEWKNWVW
HSEEDLFMEGAYFTTSGGPIQKQFSNKDLIKPKPGSYVTRLTRFAGSIPCVAGKPC"
BASE COUNT 496 a 551 c 602 g 429 t
ORIGIN
1 ggcacaggcc gagcaatgga gctcatcgtc ctaccttcac acagctgaaa aaattccctc
61 atatacaaga taaaggtagg aggagggccg ggagctcgac ggatttcgat caattgtggt
121 ttttttttgt ggtaaccgta taagagagga gattttgttt aacgtagcta gatcatatct
181 gagttgagtt ttagcaatgg aggtgctgat ccggtggagc aagctgccgg cggccggctc
241 cttggtgctg tacgccgtct tcttattgct gtcggcggca gccacatcgg aggccaacat
301 cggggagtac gatgagtact ggcagaagcg caagctcatg gctgatgccg ccgccgaggc
361 tacctacaag cgtgacccct tcgaggtcac caacagcttc aaccgcgccg tccacagatc
421 ggaggaggag agcgggagga gggagctggc gatgacgaag aggaagaagt tcgcggggcc
481 gtgcaaggcg acgaacccga tcgaccggtg ctggaggtgc cgcgccgact gggtgacgga
541 caggaagcgg ctggcgcggt gcgcgcaggg gttcggccgg aacaccaccg gagggctggc
601 cgggaagttc tacctggtga cggacggcac cgacgacgac gtggagaacc cgcgcccggg
661 gacgctccgg tggggtgtca tccaggacga gccactgtgg atcatcttcg ccaaggacat
721 gatcatcaac ctcaaggagg agatgatgat caacagcgac aagacgatcg acgggcgggg
781 agcgcaggtg cggatcacca atggcgcgca ggtgacggtg cagaactcca acaacgtgat
841 catccacaac atccacatcc acgacatctt gcaaggcaag ggcgggatga tccgcgactc
901 gccggagcac ttcggcttcc gcacccagtc cgacggcgac ggcatcagca tcttcggctc
961 caccaacgtc tggctcgacc acctctccct ctccaactgc caggacggcc tcatcgacgt
1021 catcgccaag tccaccggag tcaccatctc caactgccac ctcaccaacc acaacgacgt
1081 catgctcttc ggctccagcg actccttcag cgaggaccag atcatgcaga tcaccgtcgc
1141 tttcaaccac ttcggccgcg gcctcgtcca aagaatgccc agatgccgat ggggattttt
1201 ccacgtggtg aacaacgact acacgcactg gctcatgtat gccatcggag ggagcaagaa
1261 cccgacgatc atcagccagg ggaacaggta catcgcgccg ccaaacctag cggcgaagcg
1321 gatcacgaag cagctcgggg cgacggagga ggagtggaag aactgggtgt ggcactctga
1381 ggaggacctg ttcatggagg gggcctactt caccacgtcc ggtggcccga tccagaagca
1441 gttcagcaac aaggatctga tcaagcccaa gcccggatcc tacgtcacga ggctcacccg
1501 cttcgctggc tccatcccat gcgtggccgg caagccgtgc tagagcgcgg tggccggccc
1561 ccaccggatc cacggctagc cggagatgat tcttattttg tagttgtgtg agcttatttt
1621 ttcttctaca catacgtact tactcaagaa atcttgatct gtggccggcc gggttctggt
1681 caatgtgatc ctataggttc tacatataaa aaagttgtat taattaaaag catttttgga
1741 agcggtggcg atgcaaattt agagggcgat agggcgagga gcatgcatgt ttgtgcgtat
1801 aggtctactt gttgatggtg atcacgaaag agccaatgca ttgtcatgat agaggacatg
1861 cgcatttatg cagaaggccc tagggcagga attatttttt tttcattgat tgttttaaat
1921 gtattgtact gaaactacat tgttgtttca ttaactgcac gcatctccaa tgcaaagtgc
1981 taatgtaagg tgtttaatat atagtgctaa tgtaaagtgc aatgaagcat ctcactacta
2041 tagaagatga cttcagtgtc gggtcgtaac ccctcacc
//