LOCUS AK072566 2725 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023134O09, full insert
sequence.
ACCESSION AK072566
VERSION AK072566.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2725)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2725
/clone="J023134O09"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 129..2519
/db_xref="Osa1:LOC_Os01g66130"
/db_xref="RAP-DB:Os01g0884400"
/note="(RAP Annotation release2) U box domain containing
protein"
/note="(Rice Genome Annotation Project) armadillo-repeat
containing protein, putative, expressed"
/note="mapping to R01-TIGRv4S1-001797F (Chr.1: short
arm=38736088, long arm=38739904, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG93036.1"
/translation="MDSVSLSLLDSISNFRVLSSSNASKTELVKKYCQTMDGILDHLE
VALNRAFPQITPDGELSKVLEELGATINEATELVGGWNQMMSKIYFVIQADSIIAKMQ
IYVFELCQIVNSLMQIESMHLEDLEHDSCGKISDVIREASRALAGEVMPNSEEFGKIQ
TTLSLSTNQELLMEYVALVKVKTKGNHEDNKEMDDINDIVELVNHMLDKHVEEKQTRS
INGVTIPADFCCPLSLELMSDPVIVASGQTYEHVFIRKWFDLGYNICPKTRQILGHTK
LIPNFTVKQLIENWCEVHGIMLPDPVKLLSLCFPVSLNITDGSASADKSGSPEHCQLV
AALHPKAQCASDDSHHYNLIHENSDSDDRVSSFGDTDDSEPDSLRLSTETTAANKSLL
DEKTDRSDGLKQLRDNGFQVSDEEQYLERNGKSHISSHHQLEVDGENVRVQASSDINA
SEVMQDDPVTTCSKVSDNPPRLGGVRSRNQPNWWRQSNKTIPRIGLSSSTDSKPDFSG
NDAKVRNLIEELKSDSAEVQRSATGELRILSRHSLENRIAIANCGAIPFLVSLLHSTD
PSTQENAVTILLNLSLDDNNKIAIASAEAIEPLIFVLQVGNPEAKANSAATLFSLSVI
EENKIKIGRSGAIEPLVDLLGEGTPQGKKDAATALFNLSIFHEHKTRIVQAGAVNHLV
ELMDPAAGMVDKAVAVLANLATVHDGRNAIAQAGGIRVLVEVVELGSARSKENAAAAL
LQLCTNSNRFCTLVLQEGVVPPLVALSQSGTARAREKAQVLLSYFRNQRHVRVGRG"
BASE COUNT 782 a 572 c 630 g 741 t
ORIGIN
1 ggtcttcgtc tccgcctcct gcgacgaagc gaagcgagac gcctccgcct cgcgcgagcc
61 accacgagca cctcgacacg ggagtccgaa tcctcctcct cccccctcca ttggaggcct
121 ccgaggtgat ggattcagtg tcattgtcac tactcgatag tatttcaaat ttccgggtgc
181 tgtcttcaag caatgcctcg aaaacagagc tagttaagaa atattgccaa acgatggatg
241 gcatccttga tcacttggag gtggccctaa acagagcttt tcctcagatt actccagatg
301 gtgaactaag taaagtgctt gaagaacttg gcgctaccat caatgaagcg actgagctag
361 ttggaggctg gaatcaaatg atgagcaaga tttattttgt tattcaggct gattcaatta
421 ttgccaagat gcagatatat gtattcgaat tatgccaaat tgtcaattct ctcatgcaga
481 ttgagtcaat gcatttggag gatcttgaac acgatagctg tggaaaaatt tcagatgtca
541 ttagggaggc ttccagggct ttagcagggg aagttatgcc aaattcagag gaatttggaa
601 agattcaaac tactttgagc ttatccacaa atcaggagtt gctgatggaa tatgttgcac
661 ttgttaaggt taaaacaaaa ggtaatcatg aagataacaa agaaatggat gatattaacg
721 atattgttga attagtcaac catatgcttg acaaacatgt ggaagaaaag caaacacgta
781 gcattaatgg agtgaccatt cctgctgatt tttgttgtcc tctttccctt gaactaatgt
841 cggatccagt gattgtggca tctggtcaaa cgtatgagca tgtttttatc agaaaatggt
901 ttgatctggg atacaacatt tgtccaaaga cacgccaaat attgggacac accaaattga
961 ttcctaactt cactgtcaaa cagttgattg aaaattggtg tgaggtacat ggtataatgc
1021 taccagatcc tgttaaactc ttgagtttgt gcttccctgt ttccctcaac atcacagatg
1081 gaagtgcaag tgcagacaag tctggatcac cagaacactg ccaattggta gctgcattgc
1141 atccaaaagc acagtgcgca tcggatgata gtcatcatta taatttgata catgaaaact
1201 ctgattcaga tgatagagtg tcatcatttg gagacacaga tgattctgaa cctgattctt
1261 taagattatc aacagaaact actgcagcaa acaaatctct acttgatgaa aaaactgatc
1321 gttctgatgg tcttaagcaa ttgagagaca atggttttca agtttctgat gaggaacagt
1381 atctcgaaag gaatggtaaa agtcatatca gcagccatca tcaacttgaa gttgatggag
1441 agaatgtcag ggtacaagca tcaagtgaca tcaatgcatc tgaagttatg caagatgatc
1501 cggtcaccac atgttcaaag gtatcagata accctcctag attgggtggt gttcgttctc
1561 gaaatcagcc aaactggtgg agacagtcta ataaaactat tcctaggatc ggattgtcat
1621 cttcgacaga ttcaaaacca gatttttctg gcaatgatgc taaagtgcgt aatcttatcg
1681 aggaactgaa aagtgattct gctgaggtcc aaaggtcagc aacaggagag ctccgcattc
1741 tttctagaca cagcttggag aatagaattg ccatcgcaaa ctgcggagca atccccttct
1801 tggtgagtct acttcattct acagacccca gcacacaaga aaatgctgtg acaattctcc
1861 tgaatttgtc attggatgac aataacaaga ttgccatagc aagtgctgag gccattgagc
1921 ctctcatctt cgttcttcag gtgggaaacc ccgaagcgaa agccaactca gctgcaactt
1981 tattcagcct ctcagtcatt gaagagaaca agatcaagat tggacgttcc ggtgccatcg
2041 aaccattagt agatttactg ggagaaggta ccccgcaagg gaagaaggat gcagctactg
2101 cactcttcaa tctgtcgata tttcatgaac acaagacccg cattgttcag gctggggctg
2161 tcaaccacct ggtggagctg atggatccag ctgctgggat ggttgataaa gctgttgctg
2221 ttctggcaaa ccttgcgact gtgcatgatg gaaggaatgc cattgctcag gcaggaggca
2281 tccgagtact ggttgaggtt gttgagctgg gttctgcacg ttcaaaggag aatgccgctg
2341 ctgccctgct acaactctgc acaaacagta acaggttttg caccctggtt cttcaagaag
2401 gcgtcgtgcc acctttggtt gcattgtcgc aatcaggcac agcccgtgca agagagaagg
2461 ctcaggttct tctaagctat tttcgcaacc agcgccacgt cagggttggg agagggtaag
2521 tctacgcaat taagcagcaa tgcggcggtc tgattattgt tccatgatcc cgttggccgg
2581 gcaattaaga gatgtatatt ccatcctagt cgtagcatat tttttctggt agtgattcca
2641 aatgattgat gtcacaagtt gcttcctgta aagaagaccc atctattgtg tatacatggt
2701 tttcacgata tttagttcac ttctg
//