LOCUS AK072382 2374 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023075D08, full insert
sequence.
ACCESSION AK072382
VERSION AK072382.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2374)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2374
/clone="J023075D08"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 275..2050
/db_xref="Osa1:LOC_Os12g41180"
/db_xref="RAP-DB:Os12g0604700"
/note="(RAP Annotation release2) Similar to LSTK-1-like
kinase"
/note="(Rice Genome Annotation Project) LSTK-1-like
kinase, putative, expressed"
/note="mapping to R12-TIGRv4S1-000778R (Chr.12: short
arm=25484626, long arm=25488680, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG92945.1"
/translation="MDQYEVLEQIGKGAFGSALLVRHKLEKKKYVLKKIRLARQTDRT
RRSAHQEMQLIATVRNPFIVEYKDSWVEKGCYVCIVIGYCEGGDMAEAIKRANGTYFS
EEKLCKWLVQLLMALDYLHANHILHRDVKCSNIFIARDQSIRLGDFGLAKILTSDDLA
SSVVGTPSYMCPELLADIPYGTKSDIWSLGCCIYEMTALRPAFKAFDMQALINKITKS
IVSPLPTKYSGAFRGLIKSMLRKSPEHRPSAAQLLKHPQLQPYVLQVQLKSSPTRNIL
PIHQSLTDKVKKMTFPSDVVDSARRRMARRNSLGNERTVTFSKPSPERNSVSSTRSIK
EYTTTQSVKGLSVDSSEAGDEVTSKAIITKTSSILRTPKSLPAKTYTARNQLEPPKTS
YNRTYRSELPSKTTPNKIARPARRASLPLSTYETPTKRSISILEQLDSPDVSVNAPRI
DRIAEFPLASSEDPLLPIHNKLSPGHGSCSTPPFINRSITKDKCTIQVLRTDGDNGSD
SSGRNATAASSRGSNDSRQQRFDTSSFQQRAEALEGLLEFSAQLLQQERYEELGILLK
PFGPEKASPRETAIWLTKSFKETAS"
BASE COUNT 626 a 575 c 583 g 590 t
ORIGIN
1 ggaaccccac caaaaacccc atcttttttt tcttttcttt tcattttcgt tcttccctcg
61 ctgcggcttt caatttcgcg gctcgtgttc ttctcttctc ggtgcccctg ccttggctct
121 cctccgatca aatgcggcga gatctgcgcg cgtgaaggcg tcggcgcggg ggcccaaaga
181 tcgatccttt gctgatcggg agtttgggtg gggggaagcg agttcttgga tcttcgcggt
241 ggtttcttgg gggcgtctct cgtaggaaaa agggatggat cagtatgagg tgctggagca
301 gattgggaaa ggggcgtttg gctcggcgtt gttggtgagg cacaagctgg agaagaagaa
361 gtatgtgctg aagaagattc ggcttgcgcg gcagaccgac cgcacccgcc gctctgcgca
421 ccaggagatg caacttattg cgacggtcag gaatccgttt atcgtggagt acaaagattc
481 atgggtggag aagggttgct atgtctgcat tgttatagga tattgtgagg gaggagacat
541 ggctgaagct attaaaagag ctaatggtac atatttctct gaggagaagc tttgcaaatg
601 gcttgtgcaa cttctcatgg ctctagatta tttacatgca aaccacattc ttcaccgaga
661 tgtcaagtgc tccaatattt tcattgccag ggaccaaagt ataagacttg gtgactttgg
721 gcttgcaaaa atattgactt ctgatgatct ggcatcttct gtagtaggaa caccaagtta
781 catgtgtcca gaacttcttg ctgatatacc atatggtacc aagtcagata tttggtctct
841 aggatgttgt atatatgaaa tgaccgcgct caggcctgca tttaaagctt ttgacatgca
901 agcgctgatt aacaagatca cgaaatcaat agtctcacca ttacccacta aatattctgg
961 tgcctttagg ggacttatta agagcatgct gcggaaaagt ccagagcaca gacctagtgc
1021 tgcacagcta ctcaagcatc cacaacttca gccttatgtg ctgcaagtcc aattgaaatc
1081 tagtcctact cgcaacatac ttccaatcca tcaatctttg actgacaaag ttaagaagat
1141 gacatttcct agtgacgtgg ttgattctgc acgcagaaga atggccagga ggaactctct
1201 gggaaatgag aggactgtga catttagcaa gccatctccg gaacggaatt cagttagctc
1261 tacacggagc atcaaagaat acacaaccac ccagagtgtc aaagggctct ctgttgacag
1321 tagtgaggct ggggatgagg ttaccagtaa agccatcata acaaagacat caagcatcct
1381 aaggacgccc aagagcttgc cagccaagac ttatacagct agaaatcagc ttgaacctcc
1441 caaaacatcg tataacagaa cataccgctc tgagctgccc tcaaaaacaa ctccaaacaa
1501 aattgcccga ccagcaagaa gagcatcact cccgctgtca acatatgaaa cacccaccaa
1561 gcgcagcatc agcattctgg aacaactaga ctcccctgac gtctctgtga atgcccctcg
1621 aatcgacaga attgcggaat tcccactggc atcgtctgag gaccccttgc tccccatcca
1681 caacaagctc tctcctggcc atggctcatg ttccactcct ccctttatca accggtcaat
1741 caccaaggac aaatgcacga tccaggtgtt acgcaccgat ggggacaacg ggagcgactc
1801 ctcaggccgc aacgccactg ctgcctcgag ccgcggatcc aatgactcca ggcagcagcg
1861 gttcgacacc tcgtcgttcc agcagcgtgc cgaggcattg gaagggctgc tggagttcag
1921 cgcgcagctg ctgcagcagg agaggtatga ggagctgggc attctgctga agccattcgg
1981 accggagaaa gcgtctccca gggagacggc catctggctc acaaagagct tcaaggagac
2041 ggcatcatag cgccaccttg tatcaggcgc gtctaaaatc gccagttttg tcatgtgcaa
2101 tattagctca ggtagtggta aacaatattt aggatttgag acttttagct gttgggaggc
2161 agcaccatct cagtgttgct gttaactcaa aatctacttc tagctctagc tagtttccag
2221 ttttttactt tctattagga atcagcaatc agcagcagga gttgtagtag tagaactgta
2281 agttaagctg aagatcttgc aagatcttag aacctttgta atcatgtggc acctgcaatc
2341 atgtagtgat ataaatgtgg ggttaaggat atcc
//