LOCUS AK072260 3633 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023005B09, full insert
sequence.
ACCESSION AK072260
VERSION AK072260.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3633)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3633
/clone="J023005B09"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..3633
/db_xref="Osa1:LOC_Os06g22980"
/db_xref="RAP-DB:Os06g0336500"
/note="(RAP Annotation release2) Similar to CSLD2
(Fragment)"
/note="(Rice Genome Annotation Project) CSLD5 - cellulose
synthase-like family D, expressed"
/note="mapping to R06-TIGRv4S1-000528F (Chr.6: short
arm=13413641, long arm=13417273, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 630 a 1243 c 1128 g 632 t
ORIGIN
1 gcttcgcagc aatggcgaga gccgcatggg ggctccgaga agctagctag ctaggacgaa
61 cgcgaatgtc ctcgtcgtcg gcggcaccca ggcagccacc cgagacaggt ttacgcggcg
121 gacggcgagc ctagcggcct cccgcggccg cagcctctcc aacccacgac cacgacgacc
181 acctcgacgt cgcgctggag tacccgtcct tcgccgccat gtcggtcgac tacgccaact
241 acaccgtcct catgccgccc accccggaca accagccgtc cgggggtgcc ccgcccgcgg
301 cgccgtccgc cggtggcgct aggccgggcg atctgccgct cccgccctat ggctcgtcgt
361 cctcctccag gctcgtcaac cggcgcggtg gcggcgacga cggcgccaag atggaccggc
421 ggctgtcgac ggcgcgcgtc ccggcgccgt ccagcaacaa gtcgctgctg gtgcgcagcc
481 agaccggtga cttcgaccac aaccggtggc tgttcgagac caagggcacg tacggcatcg
541 ggaacgccta ctggccccag gacaacgtgt acggcgacga cggcggcggc ggcgccgtca
601 agatggagga cctcgtcgag aagccgtgga agccgctgag ccgcaaggtg cccatccctc
661 cgggcatcct cagcccctac aggctgctgg tgttggtgcg gttcgtggcg ctcttcctct
721 tcttggtgtg gcgcgtcacc aaccctaaca tggacgcgct ctggctgtgg gggatctcca
781 tcgtgtgcga gttttggttc gccttctcct ggctgctcga ccagatgccc aagctgaacc
841 cgatcaaccg cgccgccgac ctcgccgcgc tcaaggagaa gttcgagtcg ccgtcgccga
901 cgaacccgac ggggcgctcc gacctgccgg ggcttgacgt cttcatctcc gccgccgacc
961 cctacaagga gccgacgctg gtgacggcca acacgctcct ctccatcctc gccaccgagt
1021 accccgtgga gaagctgttc gtctacatct ccgacgacgg cggcgcgctg ctgaccttcg
1081 agtccatggc ggaggcgtgc gcgttcgcca aggtgtgggt gcccttctgc cgcaagcaca
1141 gcatcgagcc gcgcaacccg gattcctact tcacgcagaa gggcgacccg accaagggca
1201 agaagcggcc ggacttcgtc aaggaccgcc gctggatcaa gcgcgagtac gacgagttca
1261 agatccgcgt gaacagcctc cccgacctca tccgccgccg cgccaacgcc ctgaacgccc
1321 gcgagcgcaa gctggcgcgc gacaagcagg ccgccggcga cgccgacgca ctcgcctccg
1381 tgaaggccgc cacctggatg gccgacggca cgcactggcc gggcacctgg ctggacccgt
1441 cccccgacca cgccaagggc gaccacgcca gcatcgtgca ggtgatgatc aagaacccgc
1501 accacgacgt ggtgtacggc gaggccggcg accacccgta cctggacatg accgacgtgg
1561 acatgcgcat cccgatgttc gcctacctgt cgcgggagaa gcgcgccggg tacgaccaca
1621 acaagaaggc cggcgccatg aacgccatgg tgcgcgcgtc ggcgatcctc tccaatggcc
1681 ccttcatgct caacttcgac tgcgaccact acatctacaa ctgccaggcc atccgcgagg
1741 ccatgtgcta catgctcgac cgcggcggcg accgcatctg ctacatccag ttcccgcagc
1801 ggttcgaggg gatcgacccc tccgaccgct acgccaacca caacaccgtc ttcttcgacg
1861 gcaacatgcg cgcgctcgac ggcctccagg gccccatgta cgtcggcacg ggctgcctct
1921 tccgccgcta cgccatctac ggcttcaacc cgccgcgcgc catcgagtac cgcggcacct
1981 acggccagac caaggtgccc atcgacccgc gacaaggcag cgaagccatg cccggcgccg
2041 gcggcggccg cagcggcggc ggcagcgtgg gcggcgacca cgagctgcag gcgctgtcga
2101 cggcgcaccc ggaccacgag gcgccgcaga agttcggcaa gtccaagatg ttcatcgagt
2161 ccatcgcggt ggccgagtac caggggcggc cgctgcagga ccacccgtcc gtcctgaacg
2221 gtcgcccccc cggcgcgctg ctgatgccgc ggccgcctct ggacgcggcg acggtggcgg
2281 agtcggtgtc ggtgatctcg tgctggtacg aggacaacac ggagtggggg cagcgcgtgg
2341 ggtggatcta cgggtcggtg acggaggacg tggtgaccgg gtaccggatg cacaaccgcg
2401 ggtggcggtc ggtgtactgc atcacccggc gcgacgcgtt ccgcgggacg gcgccgatca
2461 acctgacgga caggctgcac caggtgctcc ggtgggcgac ggggtcggtg gagatcttct
2521 tctccaagaa caacgcggtg ctggcgtcca ggcggctcaa gttcctgcag cggatggcgt
2581 acctcaacgt tgggatctac cccttcacgt cgctcttcct catcatgtac tgcctcctcc
2641 cggcgctgtc gctcttctcg gggcagttca tcgtggcgac gctggacccg acgttcctct
2701 cctacctgct gctcatcacc atcaccctca tgctgctctg cctgctggag gtgaagtggt
2761 ccgggatcgg gctggaggag tggtggcgga acgagcagtt ctgggtgatc ggcggcacgt
2821 cggcgcacct ggcggcggtg ctgcagggcc tgctcaaggt ggtggccggg atcgagatct
2881 ccttcacgct cacggccaag gcggcggcgg aggacgacga cgaccccttc gccgagctct
2941 acctcatcaa gtggacgtcg ctcttcatcc cgccgctcgc cgtcatcggg atcaacatca
3001 tcgcgctcgt cgtcggcgtg tcgcggacgg tgtacgcgga gatcccgcag tacagcaagc
3061 tgctcggcgg cggcttcttc agcttctggg tgctcgcgca ctactacccg ttcgccaagg
3121 gcctcatggg ccgccgcggc cggacgccca ccatcgtcta cgtctgggcc ggcctcatct
3181 ccatcaccgt ctctctcctc tggatcacca ttagcccccc ggatgatagc gtcgcgcggg
3241 gcggcatcga cgtgtgactt ttcgtgacac acaccatcac ccatcactgg tactaagatc
3301 gatcgagata tgcatggcca gacatacaag aaattgccaa gagatttata tgtgccaatt
3361 gcatgaaccg tgcactacat gcatcgatca gatttgcact gtacgttcaa gatgttctgg
3421 ttagtgtgtc gtgttggagt actgatttgg tttttgtaag aaagaatttg ctgggtttat
3481 tagcatgtac gtcctgtgtt acttaaggat gccagagcag ggtccatttt gtacaagagt
3541 ttcccatgtg tgtaccaata tacggacagg gcagtactga ctgactgtac atgattttct
3601 gtatttgggt tctggtaaaa ttacctattc ttg
//