LOCUS AK072244 3941 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J023003F07, full insert sequence. ACCESSION AK072244 VERSION AK072244.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 3941) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..3941 /clone="J023003F07" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 362..3382 /db_xref="Osa1:LOC_Os05g33610" /db_xref="RAP-DB:Os05g0405900" /note="(RAP Annotation release2) WD40-like domain containing protein" /note="(Rice Genome Annotation Project) expressed protein" /note="mapping to R05-TIGRv4S1-000641F (Chr.5: short arm=19685640, long arm=19691876, direction=forward) for TIGR Pseudomol ver4" /protein_id="BAG92887.1" /translation="MRRGKGGRNGLLPSSLRIISSCLKTVSSNAGSVASTVRSAGASV AASIAPQAEDEKDQVLWAGFDKLELHPSSFKHVLLVGYSNGFQVLDVEDAANVCELVS KRDGPVTFLQMQPTPVYSDGTEGFRTSHPMLLVVAGDETNGSGMVQGGRLSALIRDNS SETPNGNCISTPTVVRFYSLKSHSYVHVLRFRSAVYIVRCSPRIVAVALAAQVYCFDA VTLENKFSVLTYPLQGAPGINIGYGPMAVGPRWLAYASNSPLLSSTGRLSPQNLTPSP GVSPSTSPSSGSLVARYAMESSKQIAAGIINLGDMGYKTLSKYCQEFLPDGSGSPLSS SPGRRSGKLPSSVHPLEADNAGMVVIKDFISKEIISQFRAHTSPISALCFDPSGTLLV TASVHGHNINVFRIMPTVIANSSGSIRYDWTASHVHLYKLYRGMTAAVIQDISFSHFS QWISIVSSRGTCHIFTLSPFGGDASLLPQNSHSDGLPLAPCQSRPWWSKPSFLMDHQL HPAPSTVTNSVVSRIKNSSSGWLNTVSNVAASASGKLSVPSGAVTAVFHNSNYEGSLP VPSKANAMEHLLVYSPSGHVIQHELLPSGSESSDSSPIVGPGSLQIQDDELHVTAEPT QWWDVCRRTNWPERDENIANIVFHNQRNSMMAMDASDCDSEHSDSVPSDGISGKEMMR SRERSSWYLSNAEVQISSWRIPIWQKSKIFFYVIDQPPAKSGESLSSSGGEIEIEKLP LHEVELRRRELLPVFKQFHYSEQNFSDRFRNLAIGRFQNALTYIDKDNGAHGSKAGFP ISGFYSDMRKMQNMNGLEGQLLLEPITNDLQPMEKCNSVQSPKVANFTALHNVDNESM NHVSTATGATTSVTTVDTLPSTIRPLSSYSLLDGSLDDGLPSPASNVSFRPQITNNSS VSNGTMTDISNGCLTSINSGQNEASDSHNSVEFTQYFQEGYCKISELDDCRELTEAVT DADSSSSHCEREKPEEDGDNDDMLGAVFAFSEEG" BASE COUNT 1023 a 830 c 1019 g 1069 t ORIGIN 1 gaggcacacg aaagcaacag cgaggagggg agagagagag agagagagag agagaggaaa 61 agggagaagc caaggagttg ttggttctgg tcggagtcgg aggaggagga ggaggaggag 121 ggagatggtg gcgagctgac ttggcggatc gcggcggcgg cggcggggga tcggaggggg 181 agcagggcca ctcggatggt attgggcttc gccggcgccg gaggcggcga tcgcggatgg 241 gcggcgggcg gggcgggggc cgggggttgt aggtggagga ggaggagggg cggttccgga 301 gtttggggag ggggcggcgg tgctcgtgct gggggaggag tggggaggag gaggaggagg 361 gatgaggcgc gggaagggcg ggaggaacgg gctgctgccg agctcgctga ggatcatctc 421 gtcgtgcctc aagacggtgt cgtccaacgc cggctccgtc gcgtccacgg tgcgctcggc 481 cggcgcctcc gtcgccgcct ccatcgcccc ccaggccgag gacgagaagg accaggtatt 541 gtgggctgga tttgataaat tagagcttca tccatcatct ttcaagcatg ttttgcttgt 601 tggttattca aatgggttcc aagtgcttga tgttgaggat gctgcaaatg tttgcgaatt 661 ggtctcaaaa cgtgatggtc cagttacatt tttacaaatg caacccacac cagtttactc 721 tgatggtact gaaggattca gaacatcaca tcccatgctt ctggttgttg ccggtgatga 781 gacaaatggg tcgggtatgg ttcaaggtgg tcgcttaagt gcactgatca gagataatag 841 cagtgaaact ccaaatggaa attgcatttc tactccaaca gttgttcgct tctactcttt 901 gaagtctcac tcatatgtac atgttctgag atttcggtct gccgtatata tagttcgctg 961 cagcccccgg attgtagctg tagctcttgc agcacaagta tactgctttg atgctgtgac 1021 ccttgagaat aagttcagtg tcttgacata tcctttgcaa ggggcacctg ggataaatat 1081 tgggtatggc ccaatggctg ttggcccaag gtggttagct tatgcttcca atagcccttt 1141 attatcaagc acaggccgtc taagtccaca gaaccttaca ccatctccag gagttagccc 1201 atctacctcc cctagtagtg gaagtttagt tgctcggtat gcaatggaat caagtaagca 1261 gatagctgct ggtattatta atcttggtga tatgggatac aagacactgt caaagtactg 1321 ccaagaattt ctgccagatg gttctggctc ccccttgtca tcaagtcctg gcagaagatc 1381 tggcaaactt ccctctagcg tgcatccgct ggaagctgac aatgctggaa tggttgtcat 1441 caaggatttt atctcgaaag aaatcatatc tcagtttagg gctcacacaa gtcccatatc 1501 tgctctttgt tttgacccta gtggaactct gttggtcaca gcctccgttc atggccataa 1561 cataaatgtt ttcaggatca tgccaaccgt aatagctaac agctcaggct ctatacgcta 1621 tgattggaca gcatctcatg tccaccttta caaactgtat cgtggcatga cagcagctgt 1681 catccaggat atctctttta gccattttag ccagtggata tctattgttt catcccgagg 1741 tacttgccat atttttacat tgtctccttt tggcggtgat gcgagtctgc tgccacagaa 1801 ttctcacagt gatgggctac cccttgcccc atgtcaatca aggccatggt ggtcaaagcc 1861 atcattcctt atggatcatc agcttcatcc agctccttca actgtaacta attctgtagt 1921 cagtaggata aaaaacagtt cttctggttg gctaaatact gttagtaatg tggctgcttc 1981 tgcaagtggg aaactatctg taccatctgg cgctgttact gctgttttcc acaattccaa 2041 ctatgaaggt tcattgccag ttccatcaaa ggctaatgcc atggagcatc tattggtgta 2101 ttcaccatct ggccatgtta ttcaacatga actactgcct tcaggttctg aatcctctga 2161 tagcagtcca atagttgggc ctggttcctt gcagatccaa gatgatgagt tgcatgttac 2221 tgctgaaccg actcagtggt gggatgtatg ccgtaggaca aactggccag aaagggacga 2281 aaacattgca aacatagtct tccataatca acgaaatagt atgatggcaa tggatgcttc 2341 tgactgtgat agtgagcatt cagattccgt tccatcagat ggtatttctg ggaaagagat 2401 gatgagatct cgagaaagat caagttggta cctctcaaat gcagaggtac agataagttc 2461 atggaggatt cccatttggc agaaatcaaa gattttcttc tatgtgatag atcaaccacc 2521 tgcaaaatca ggggaatctc ttagctctag tgggggagag attgagattg agaagctgcc 2581 tctgcatgag gttgaacttc ggaggaggga attgctccct gtattcaagc agttccacta 2641 ttctgaacag aacttcagtg acagattcag gaatcttgca ataggacggt ttcagaatgc 2701 attgacatac atcgacaagg ataatggtgc tcatggatcc aaggcggggt tccctatatc 2761 tggattttac agtgatatga ggaaaatgca gaacatgaat ggtttagagg ggcagttatt 2821 gttggaacct atcactaatg atttacaacc aatggaaaaa tgcaattctg ttcaatctcc 2881 taaagtggca aattttactg cccttcacaa tgtagataat gagagcatga accatgtttc 2941 aacagcaact ggagcaacca catcagtcac aacagtggac actttacctt caaccatcag 3001 accattgagc agctactccc tcttggatgg atctcttgat gatggattac catcacctgc 3061 aagtaatgta tcattcaggc ctcagataac caacaattct tcagtaagca atggtacaat 3121 gactgacatc tcaaatgggt gtctcacgag catcaattct ggacagaatg aagcatctga 3181 ttctcacaac tcagtggagt ttacccagta tttccaagag ggctattgta aaatatcaga 3241 actcgatgac tgccgtgagt taactgaagc tgttactgat gctgacagca gcagcagcca 3301 ctgcgagaga gagaagcccg aggaagatgg ggataacgat gacatgcttg gggctgtttt 3361 tgccttcagc gaagaaggtt gaacctaata atatactctg cttttacata gagaatggaa 3421 aacagtgccc gtgatattac ctagaaaatg gtggatttcc attaggcttt cgtggaataa 3481 attggtgctg agatgataat ctactatttg gtacatatta gaaaggtgaa gcttgtgctc 3541 gatatccatt tgtgagaagt tttactcagg aattgagatc aagatccttc cttccgggcc 3601 attaactaat ccacggatcc acgttaaggg gagcttggtg ttgtcgagaa gttgctgctg 3661 cctgccgcaa cactgcccct tttccgttgc tttgtacata ctgtaaaaga ccatttgttt 3721 tgtgaaatac gtctctggaa cattggacgg tccaacttcc ttggcagcca tatttgttga 3781 ctgcttcctg ccaaggcctg ttaatgttcc ttgtttattt gtacagtctt ttctgtttca 3841 ttaaggaaaa agaaaatcta gcaaggatta atgtgacata actgtataaa cattcagtaa 3901 agaatttccg tttacgaaga aatgttaatt gtttcccttg c //