LOCUS AK072197 1755 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013160N15, full insert
sequence.
ACCESSION AK072197
VERSION AK072197.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1755)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1755
/clone="J013160N15"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1755
/db_xref="Osa1:LOC_Os04g32110"
/note="(Rice Genome Annotation Project) ACR4, putative,
expressed"
/note="mapping to R04-TIGRv4S1-000387F (Chr.4: short
arm=19081890, long arm=19083716, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 302 a 578 c 565 g 310 t
ORIGIN
1 gggtccgggt ccaggccagc acgaactacg cccacaacga acttttagct gtgtttagct
61 taagccaccc accactcgca ctcgcgtacg tactcgtcgc atgtgagtta gctttggtcg
121 ccggcatggc gctcacggcg gcggcggcga gcggcggcga cgcgcacgac gacgagtacg
181 cgaagctggt gcgggggatg aacccgccga gggtggtggt ggacaacgag gcgtgcgacg
241 aggcgacggt gatccgggtc gacagcgtca gcagccacgg cacgctgctc gccgtcgtcc
301 aggtcatcgc cgacctcggc ctcgtcatcc gcaaggccta cttctcctcc gacggcagct
361 ggttcatgga cgtgttcaac gtcaccgacc gcgacggcaa caaggtgctc gatgaccaaa
421 ccatctccta catccaaacg gtactagtgc tgttcttgat cgaaatttgg ggattgaatt
481 aatttgtttg ttgatttgtg gtttggttgg ttgattgatt tttagacgct ggaggcggat
541 gactggtact acccggaggt gaggaacacg gtggggatcg tgccggcgga ggagtacacg
601 gtgatcgagc tcaccggcac cgaccgaccg gggctcctct ccgaggtgtg cgcggtgctc
661 gccggcatgc gctgcgccgt gcggagcgcc gagctgtgga cgcacaacac ccgcgtcgcc
721 gccgtcgtgc acgtcaccga cgacggcggc tccggcggcg ccatcgagga cgaggcccgc
781 atcgccgaca tcagcacccg cctcgggaac ctcctccgcg gacagagcgg cgtgcgcgcc
841 gccgccgccg ccgctccggg cgggctcacc cacaaggagc gccgcctcca ccagatgatg
901 ttcgacgacc gcgactacga cggcggcggc ggcgccgcct cctcctcgcc gcgggggcgg
961 tccccgaccc cggcgacgga ggtgtccgtg acgccgtgcg cggagcgcgg gtacaccgcg
1021 gtggtggtgc ggtgccggga ccggcccaag ctgctgttcg acacggtgtg caccatcacc
1081 gacatggggt acgtcatcca ccacggcgcg gtgagcagcg agccccgcgg cggcgcgtac
1141 caggagtact acatccggca cgtcgacggc gaccccgtcc gctccgaggc ggagcggcag
1201 cgcgtggtgc agtgcctcga ggccgccatc gagcgccgca ccgccgacgg gctggcgctg
1261 gaggtccgca ccggcgaccg cgccggcctc ctctccgacg tcacccgcat cttccgcgag
1321 aacggcctca ccatccgccg cgccgagatc tcgtcggagc gcggcgaggc cgtggacacg
1381 ttctacctct ccgacccgca gggccacccc gtggaggcca agacgatcga cgccatccgc
1441 gcgcagatcg gcgaggccac gctgcgtgtc aagcacaacc ccttcgccga cggcgatggc
1501 gccggcggcg gcggcggcgg cgccaccgat gacgtcgctg gctcgacggc gttcctcttc
1561 gggaatctct tcaaattcta ccggccgttc cagaacttca gcctcatcaa gctctactcc
1621 taattaattt actccaacct gggttaatta attagctgta aataattact tagttagtta
1681 gttttatgtt tttttcttct agattttact gtaaatatga tttcagattt atgacgacga
1741 cgaagatgat gtagg
//