LOCUS AK072127 3207 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013124E13, full insert
sequence.
ACCESSION AK072127
VERSION AK072127.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3207)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3207
/clone="J013124E13"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..3207
/db_xref="Osa1:LOC_Os06g03560"
/note="(Rice Genome Annotation Project) oligopeptide
transporter 9, putative, expressed"
/note="mapping to R06-TIGRv4S1-000068R (Chr.6: short
arm=1370852, long arm=1374439, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 799 a 791 c 721 g 896 t
ORIGIN
1 gattgacgaa ccggaggaac caaaacgacc acgcgtgaga actgagaagg ctcgcagcac
61 acacgaccat gatgctccac cacgaagcaa gtgtgcaaca agcgcgagag gaagaagaag
121 agcttgatca ccatggcgat ccgatgatca cctcccctct cttgcgacca tcgacgtcgg
181 gcagctcgcc ggagaatgga gaggaggaga actcaccggt ggagctggtg gcgctgacgg
241 tgccagtgag cgacgagccg gagacgccgg tgctgacgtt caggatgtgg gtgctgggga
301 cggcgtcgtg cgcggtgctc tccttcctta accagttctt ctggtaccgc aaggagccgc
361 tcaccatcac cgccatctcc gcgcagatcg ccgtcgtgcc gctcggccgc ctcatggcgg
421 cgacgctgcc ggagcacgcc ttcttccgtg gccggccgtg ggagttcacg cttaatccgg
481 ggccgttcaa tgtcaaggag cacgtgctca tcaccatctt cgccaactcc ggcgccggca
541 ccgtctatgc catccacgtc atcaccggcg tccgtgtctt ctacgggaaa accctctcct
601 tcttcatctc cctccttgtc gtcctcacaa cacagtacca tcagatgctg gggttcggct
661 gggcgggaat attccggcgt tatcttgttg agccggcgtc tatgtggtgg ccatccaacc
721 tagtgcaggt ctctctgttc aggtacactg cttgaaaacc agagtagata gtatgacaaa
781 aaatcttctc accagagttg aattcttgca aaattttgat ccactcatac ctccacaccg
841 gcaatgcaag agtctgaacc accacatatg ttccacttgg aagttggaac cgctgcagtg
901 ctgcaccgaa ctacaacaaa aatggaagaa gaaaagtgac atagttagga gctgagggac
961 ctcttatata ttttctctat tattttttca agaagcttcc ctagctaaga atgacaggac
1021 aaacacaaac caaattctgt ttgagtatag taagaaatcc aagatttaaa catatgtaaa
1081 actaaaacta aaatggagtt gtgcatatac acattcttag ctctgaaacg acaaagaagt
1141 ttgcatttgc attccgtaag aaaataactt acatatttct tatactagcg cacttcatga
1201 gaaggaagca cggagaaaag gtggcttgac gcggaaccag ttcttcctgg tggcattcgt
1261 ctgcagcttt gcatactaca tcttcccagg ctacctattc cagatgctca cctccctctc
1321 ctggatctgc tgggtcttcc ccagttctgt ccttgcccaa cagcttggtt caggtctccg
1381 aggcctcggc gttggtgcaa tcggtctcga ctggtcatct atctcctcct accttgggag
1441 ccctcttgct agcccatggt ttgccactgt aaatgttggt gttggcttct tcatcgtcat
1501 gtacataatc acaccaattg catactggtt taatttctac aaggcacaaa atttccccat
1561 attttctgat ggcctcttca cctcgactgg gcaaaaatac aatgtatcca gcattgttga
1621 ctcccatttc cattttgaca ccaaggccta tgagaagaat gggccactat acctcagtac
1681 ttcccttctt gtcacatacg gtgttggttt tgcaaccctt gctgcaacaa ttgttcatgc
1741 tctcctcttc catggaaggt attttttttt cttagattcg ccactccact gtctacaata
1801 ttaaaataat gtggttaaga accatgatac ttgtctccag tgaaatttgg ctattaagta
1861 aatcagcttt tcaagaaaaa aggatggaca tacacacgaa acttatgagg agatataaac
1921 aggtccctga gtggtggttc atatgcatcc ttattgctaa catcggaacg accatatttg
1981 cttgtgaata ctacaatgag gaactccaat tgccctggtg gggtgttttg tttgcatgct
2041 ccattgcctt tttcttcacc ctcccaatag ggataatcaa agcaacaaca aatcaggtat
2101 gtggatttaa cacattgtgc atattatgtc atacagatct aaccagttca gcctttttca
2161 ttatatacag actccaggcc tgaatgtcat cacggagtac attattgggt atctgtaccc
2221 tggacgaccc gttgcaaata tgtgcttcaa ggtatatggt tacatcagca tgaaacaagc
2281 tttggcattt cttgaagatt ttaagctggg tcactacatg aagattccac cgaggacaat
2341 gtttatggct caggtggtgg gaacttcaat tgcagcattt gtgtatattg gcacagcatg
2401 gtggctaatg gagacaatcc ccaacatctg caacactgag ctcctcccgt cagatagccc
2461 ttggacctgc ccaggtgacc atgtattcta tgatgcatca gtcacatggg gacttattag
2521 cccgcgcagg atatttgggg acttaggcac ttattcagct ctaaattggt tctttttgtg
2581 tggagctatt gcccctctac ttgtctggtt tgcacacaag acattcccag gccagaactg
2641 gatcttactc atcaagacgc ctgtactaat tggtgccacc ttccagatgc ctcctgctac
2701 tgccgtcaac tacacgactt ggatacttgt tgggttcttg tcaggttatg tggtctatag
2761 atatcgacgt gattggtggg agagacacaa ttatctgctt tcaggtgcac tggatgctgg
2821 tttggctttc atggcggtct taatttactt gtgcttaggc ttggaggaca tcagtctgaa
2881 ctggtgggga aatgacttgg atgggtgtcc tttggcttct tgtcccactg ctaaaggtat
2941 agttgtcaag ggatgtgcag tctatacttg aggatctcct attgcttctt gtcccactgc
3001 tacagtgtta cccagacctc catgggtgca agccaatatg attagatcta atttgaccct
3061 tgtcatctat aaacatcagt agaaccagct ttgattcata gctggaaatt agcaatgtag
3121 tttcagggtt agtggtcata acttgtatcc tatcagtatt ctcgaaaaaa cttgtatcct
3181 accaaacaag ttaaattttg atctctg
//