LOCUS AK072077 1822 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013116K24, full insert
sequence.
ACCESSION AK072077
VERSION AK072077.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1822)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1822
/clone="J013116K24"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1822
/db_xref="Osa1:LOC_Os10g13940"
/note="(Rice Genome Annotation Project) antiporter/ drug
transporter, putative, expressed"
/note="mapping to R10-TIGRv4S1-000166F (Chr.10: short
arm=7339466, long arm=7344975, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 440 a 370 c 426 g 586 t
ORIGIN
1 gatctattta tctctgagtt tttattttct tgggggtcct gttgcaggtt ggcgttcagg
61 tgggacgagc tcgggaggga gatcatgggg attgcggtgc ccggcgcgct cgccctcatg
121 gctgacccgg tcgcctcgct cgtcgacacc gccttcattg gccacatagg cccagttgaa
181 cttgcagctg ttggtgtatc tattgccgtg tttaatcaag tatcaaggat tgcaatattt
241 ccccttgtca gtgtcacgac atcatttgtt gcggaggaag atgctacatc cagtgacaga
301 gaaaaatatg aaataaatgg cgagaatgaa ttcaatgttt cagacagtga aatggaagag
361 ctggtttctc atgaagaggc tagtgctgct cccagtaagt cgtctttcga aactgactca
421 agtgatgtca aaattgaaca taagcggaaa aacattccat cggtgtctac agcattacta
481 cttggtgggg tgctcggcct tttacaagca ctgcttcttg ttatttgcgc aaaacctctc
541 ttaggctaca tgggtgtgaa acagggctct gcaatgttga tgccagcact aaagtacttg
601 gtagtcagat ctcttggtgc tcctgctgtg cttttatctc tggcaatgca aggggtattt
661 cgtggactta aagatacaaa gacacctctt tatgcaactg tggctggaga tgcaaccaac
721 atagttttgg atccaatatt tatgtttgtc ttccagtatg gtgtcagtgg tgcagcaatt
781 gctcatgtta tatcacatgt atggtggaaa attctgcaga tatttcattg catccattct
841 cttatggagg ttaaggctac atgttgacct acttccaccc agctttaaac atatgcagtt
901 cagtcgattc cttaaaaacg gtttcctatt acttgccaga gttattgctg caacatgctg
961 cgtgacacta tctgcatcaa tggctgcacg gctaggttca gttccaatgg ctgcatttca
1021 gatttgcttg cagatctggc tggcttcgtc tcttcttgct gatggattgg cttttgcagg
1081 acaggctata cttgcaagtg catttgctcg tcaagaccat tctaaggccg cagccacagc
1141 ttctcgtata ttgcagctgg gattggtttt aggacttctc ctaagcattt ttcttggcat
1201 tggcctccgt ttaggatcaa ggttatttac tgatgaccag gatgttctac atcatattta
1261 cctaggcata ccgtttgtct ctctgactca accaatcaat gcgttagctt ttgtttttga
1321 tggtatcaat tatggagcat cagattttgg atatgctgct tattcaatga ttcttgtggc
1381 aattgtcagc atcatcttca tagtcacact agcaagttac aatggttttg tcggaatttg
1441 gatagctttg acagtctaca tgagcctccg aatgcttgca ggattcttaa ggatagggac
1501 tgcacgagga ccatggactt tctatgcagc tcaacgcatg cattctcatg aggtggttgg
1561 actttgttga acaatactat aggaagacac catggatact ttgtaaggtt ttgcaggttt
1621 ggtgggaatg gaggttgttt gaacaaaaga aaatattcaa ctgtcatgta catagataat
1681 cacacatgtt actactattc taatagattc tcccctgtcg tgtatgttgt atttgcccat
1741 gtatagttca gtatgttcgg ctggctattt tgtaacaagt ttggatataa agtcacgtag
1801 cataagatgt ttgcacaccg tg
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