LOCUS AK072074 2781 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013116D04, full insert
sequence.
ACCESSION AK072074
VERSION AK072074.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2781)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2781
/clone="J013116D04"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2781
/db_xref="Osa1:LOC_Os06g09450"
/db_xref="RAP-DB:Os06g0194900"
/note="(RAP Annotation release2) Sucrose synthase 2 (EC
2.4.1.13)"
/note="(Rice Genome Annotation Project) sucrose synthase
1, putative, expressed"
/note="mapping to R06-TIGRv4S1-000265R (Chr.6: short
arm=4795628, long arm=4801510, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 678 a 664 c 686 g 753 t
ORIGIN
1 gaactattta ttggtccttc tggatctcgg agaaaccctc cattcgtttg ctcgtctctg
61 accaccattg gttcctgaaa ttgagtcatg gctgccaagc tagctcgcct ccacagtctc
121 cgcgaacgcc tcggtgccac cttctcgtct catcccaatg agttgattgc actcttctct
181 aggtatgtta accagggaaa gggaatgctc cagcgtcacc agctgcttgc ggagttcgat
241 gccttgatcg aagctgacaa agagaaatat gctccctttg aagacattct ccgggctgct
301 caggaagcca ttgtgctgcc gccctgggtt gcactggcca tcaggccaag gcctggtgtc
361 tgggactaca ttcgggtgaa tgtaagtgag ttggcagtgg aagagctgag tgtttctgag
421 tacttggcat tcaaggaaca gcttgttgat ggacacacca acagcaactt tgttcttgag
481 cttgattttg agcccttcaa tgcctccttc ccgcgcccgt ccatgtccaa gtccatcgga
541 aatggggtgc agttccttaa ccgtcacctg tcgtccaagt tgttccagga caaagagagc
601 ctctacccct tgctgaactt cctgaaagcc cataaccaca agggcacgac aatgatgctg
661 aatgacagaa ttcagagcct tcgtgggctc caatcatccc ttagaaaggc agaagaatat
721 ctgatgggca ttcctcaaga cacgccctac tcggagttca accacaggtt ccaagagctc
781 ggtttggaga agggttgggg tgactgtgca aagcgtgtgc ttgacaccat ccacttgctt
841 cttgaccttc ttgaggcccc tgatccggcc aacttggaga agttccttgg aactattcca
901 atgatgttca atgttgttat cctgtctccg catggatact ttgcccaatc caatgtgttg
961 ggataccctg atactggtgg tcaggttgtg tacattttgg accaagtccg cgctttggag
1021 aatgagatgc ttttgaggat caagcagcaa ggccttgata tcacacctaa gatcctcatt
1081 gtaaccaggc tgttgcctga tgctgttggt actacatgcg gccagcgtgt ggagaaggtt
1141 attggaactg agcacactga cattcttcgt gttccattca ggagtgagaa tggtatcctc
1201 cgcaagtgga tctcccgttt tgatgtctgg ccattcctgg aaacatacac tgaggatgtt
1261 gcaaacgaaa ttatgaggga aatgcaagcc aaacctgatc tcatcattgg caattacagt
1321 gatggaaacc ttgttgccac tctgctggct cacaaattag gagttaccca gtgtaccatt
1381 gctcatgcct tggagaaaac caaatacccc aactcagaca tatacttgga caagtttgac
1441 agccagtacc acttctcatg ccaattcact gctgatctta tcgccatgaa tcacactgat
1501 ttcatcatca ccagtacatt ccaagaaatt gctggaagca aggacactgt ggggcagtat
1561 gaatcacaca ttgcattcac ccttcctggg ctttaccgag ttgtgcatgg catagatgtt
1621 tttgatccca agttcaacat tgtctctcct ggagctgaca tgagtgtcta cttcccgtac
1681 accgaggctg acaagaggct cactgctttc caccctgaaa ttgaggagct tctctacagt
1741 gaagtcgaga acgatgaaca caagtttgta ttgaaggaca agaacaagcc aatcatcttc
1801 tccatggctc gtcttggccg agtgaagaac atgacaggtc tggttgagat gtatggtaag
1861 aatgcacatc tcagggattt ggcaaacctt gtgattgttt gtggtgacca cggcaatcag
1921 tccaaggaca gggaggagca ggctgagttc aagaagatgt acggtctcat tgaccagtac
1981 aagttgaagg ggcatatccg ctggatctca gctcagatga accgtgttcg taccggggag
2041 atgtaccgat acatttgtga caccaaggga gtctttgtcc agcctgcatt ctatgaagcg
2101 tttggtctga ctgtcatcga agccatgaca tgtggtttgc caacaatcgc aacatgccat
2161 ggtggccctg ctgagattat tgttgatggg gtgtctggtc tgcacattga tccttaccac
2221 agtgacaagg ctgctgatat cttggtcaac ttctttgaga agtgcaagca ggattcaacc
2281 tactgggaca atatttcaca gggaggtctg cagaggattt acgagaagta cacctggaag
2341 ctgtactctg agaggctgat gaccttgact ggtgtatacg gattctggaa gtacgtaagc
2401 aaccttgaga ggcgcgagac tcgccgttac attgagatgt tctatgctct gaaataccgc
2461 agcctggcca gcgccgtccc attggctgtc gatggagaga gcacatccaa gtaatggagg
2521 ggaaaatatg catcttcagc aggagaagcc gtcagctgca ttcgaatttg ataattttct
2581 gtagttgtca tttggcatcc atgtttgcca tggatgtgta ctatgtctaa ggtttcagta
2641 cttttgcgag attttgggca gtgcttgcct caaataaacg ccggttcctg gtgtttatcg
2701 ttcagaattc aatgcaatgt tttattgccg cgcttcctca atctgtcatg ttgaatgacc
2761 actccctagt gccctactgt t
//