LOCUS AK072071 2201 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013111L16, full insert
sequence.
ACCESSION AK072071
VERSION AK072071.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2201)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2201
/clone="J013111L16"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2201
/db_xref="Osa1:LOC_Os12g14070"
/note="(Rice Genome Annotation Project) stromal 70 kDa
heat shock-related protein, chloroplast precursor,
putative, expressed"
/note="mapping to R12-TIGRv4S1-000320F (Chr.12: short
arm=7983850, long arm=7989248, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 593 a 465 c 612 g 531 t
ORIGIN
1 gggacgacca actccgcggt ggcggcgatg gagggcggga agccgacggt catcaccaac
61 gccgaggacc agcggacgac gccctccgtg gtggcgtaca ccaagggcgg ggagcggctg
121 gtcgggcaga tcgccaagcg gcaggccgtc gtcaacccgg agaacacctt cttctccgtc
181 aagcgcttca tcggccgcaa gatggccgag gtcgacgacg aggccaagca ggtctcctac
241 cacgtcgtcc gcgacgacaa cggcaacgtc aagctcgact gccccgccat cggcaagcag
301 ttcgccgccg aggagatttc cgcgcaggtc ttgaggaagt tggtggacga tgcatctaag
361 tttttgaatg acaaaattac caaagcagtg gttactgttc ctgcatactt caatgactca
421 cagaggacag caacaaaaga tgctggacgt attgcaggat tggaagttct ccgcattata
481 aatgagccga ctgctgcatc ccttgcttat ggttttgaga agaaaaacaa cgaaacgatt
541 cttgtgtttg acttgggagg cggtaccttt gatgtctctg tattggaggt tggagatggt
601 gtgtttgagg tgctttccac atctggtgac acacaccttg gtggcgatga cttcgataag
661 aaagttgtgg attggcttgc tagcaacttt aagaaagatg aaggcattga tcttctgaaa
721 gacaaacaag ccctgcagcg actcactgag gcagcagaga aagcgaagat ggaactgtct
781 acgctgtctc agacaaacat tagcttgcct ttcataactg ctactgctga tgggcctaaa
841 cacatcgaga caactctctc cagagccaaa tttgaggagc tatgttcgga cctcattgat
901 aggcttaaaa ctcctgtcac taatgccttg agagatgcca aactgtctgt tgataacctg
961 gacgaagtga ttcttgttgg tggatccact cgtatccctt ccgtgcaaga gcttgtgaag
1021 aagatcactg gcaaggatcc caatgtcaca gtcaaccctg atgaggttgt ttctcttggg
1081 gcagctgtac agggtggagt tttggccgga gatgtgaaag atgtcgttct tcttgatgtt
1141 actccattgt ctcttggtct ggagacgttg ggtggagtga tgaccaagat tattcccaga
1201 aacacaacac tgcccacctc aaaatcagag gtattctcca cagctgcaga tggacagaca
1261 agtgttgaga taaatgttct tcagggagag agagagtttg tccgggacaa caagtctctt
1321 ggaagcttcc gcttggatgg aatccctcct gcaccacgtg gtgttccaca aattgaagtc
1381 aagtttgata ttgatgccaa tggtattctc tctgttgctg ctattgataa gggtactggg
1441 aagaaacagg atatcaccat caccggcgct agtacactgc caaaggatga ggttgagaga
1501 atggtggaag aggctgacaa gtttgctcag gaggacaaag agaaaagaga tgccattgat
1561 accaaaaacc aggcagactc tgtggtctac cagactgaga agcaactgaa ggagctaggt
1621 gacaaggtac ctgcacctgt gaaagagaag gtggatgcaa agctcaacga gctcaaagag
1681 gccattgcgg gtggatcaac acagagcatg aaggatgcca tggctgcttt aaacgaggaa
1741 gttatgcaga tcggccaggc catgtacaac cagcagccta atgctggtgc tgctggacct
1801 actcctggtg ccgatgctgg accgacaagc tcaggcggta agggaccgaa tgatggagat
1861 gttattgatg cggatttcac tgacagcaat tgatagttct agcgattgaa gattattgat
1921 ggaaggatga tctgtggtgg atggctgtga gggtctgatg ggtgatggta taggaagaag
1981 ggagtgaaca aattgttctt tttgtttact atggatccca tgttcaatag gctctttagt
2041 ttgcaatttg atagcgtagg gttttgccaa cattttcctg tgatgttgaa tgaaggatta
2101 taaaaagtag ccttcaaaaa aagaggaggc aaaggttttg atcgaagaag tagctgattg
2161 atatgacctt gttccttgaa aataaaaata tcattagttc c
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