LOCUS AK072037 1856 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J013106J07, full insert sequence. ACCESSION AK072037 VERSION AK072037.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1856) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1856 /clone="J013106J07" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 242..1195 /db_xref="Osa1:LOC_Os01g69980" /db_xref="RAP-DB:Os01g0924400" /note="(RAP Annotation release2) Similar to Auxin-induced basic helix-loop-helix transcription factor" /note="(Rice Genome Annotation Project) TCP-domain protein, putative, expressed" /note="mapping to R01-TIGRv4S1-001908F (Chr.1: short arm=40804088, long arm=40805944, direction=forward) for TIGR Pseudomol ver4" /protein_id="BAG92795.1" /translation="MDPKFPPPPPLNKTEPTTTTTNQQHHHDEQQQQHRLQIQVHPQQ QEQQDGGGGGGKDQQQQQQMQVVVAAAAGERRMQGLGPKRSSNKDRHTKVDGRGRRIR MPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAATGTGTIPASALASVAPSLP SPNSALSRSHHHHHHMWAAAPPTASAGFAGAGFSGADSGVIGGIMQRMGIPAGIELQG GGAGGLGGGGGGGGGHIGFAPMFASHAAAAAAMPGLELGLSQDGHIGVLAAQSLSQFY HQVGAAGQLQHQHQHHHQQQQQQQDGEDNRDDGESDEESGQ" BASE COUNT 343 a 526 c 556 g 431 t ORIGIN 1 gaagattttc ttattcttct tcttctcctc ctctctcttc tcctcttctt gcacctcctc 61 accttctcct ctcctctcct cttcttctcc atcaccatcc acccatccaa ctggtccaac 121 tcctccaatc gtttgcttct tcttcttcct cttctcgctg ttcttggtgg aggaggagat 181 tagggtttga ttagggtaga tagagagaga ggggttgggt ttggttggtg tttgtgtgga 241 gatggacccc aaattccccc cacccccacc gctaaacaaa acggagccca ccaccaccac 301 caccaaccag cagcatcacc acgatgagca gcagcagcag catcgcctcc agattcaagt 361 tcatcctcag cagcaggagc agcaggatgg aggtggagga ggagggaagg atcagcagca 421 gcagcagcag atgcaggtgg tggttgcggc ggcggcgggg gagaggagga tgcaggggct 481 agggccgaag cggagctcga acaaggaccg ccacaccaag gtggacgggc gggggcggcg 541 gatccggatg ccggcgctgt gcgccgcccg gatcttccag ctcacgcggg agctcggcca 601 caagtccgac ggcgagaccg tccagtggct gctccagcag gcggagccgg ccatcgtcgc 661 cgccacgggg accgggacca tcccggcgtc cgcgctcgcc tccgtcgccc cctccctccc 721 ttcccccaac tccgccctct ccaggtcgca ccaccaccac caccacatgt gggcggcagc 781 gccgcccacg gcgtccgccg ggttcgccgg tgcagggttc tccggcgccg actccggggt 841 gatcggcggg atcatgcagc ggatggggat ccccgccggg atcgagctcc agggcggggg 901 agcggggggg ttggggggtg ggggtggcgg cggcggtggc cacatcgggt tcgcgcccat 961 gttcgccagc cacgcggcgg cggcggcggc catgccgggg ctagagctag ggctctcgca 1021 ggacggccac atcggcgtgc tcgccgcgca gtcgctcagc cagttctacc accaggtcgg 1081 cgccgccggt cagctgcagc accagcacca gcatcaccat cagcagcagc agcagcagca 1141 ggacggggag gacaaccgcg acgacggcga gtccgatgag gagtccgggc agtagtagcc 1201 gcgccacctg aatttgttca tccacgcgtc gtctcttcgg aggagaaaag agaattctag 1261 gaaggacatg cagctaatgg aggggggaat ggaatgcttt tgttactgtt gggttgttct 1321 tcatgggggt ttttatgtct gatttttttt cctcgtgtgg tgtcgaagct cgaaagaggc 1381 tactactttg ctccggcgac ttgttgggat ggatcatgat catcttcagt tgttactcct 1441 gctgctccat ggatggttgc cggtttatcc ccctccaagt gtttaggtga aagctcaata 1501 tttcgcactc gacagtcaac acatgacatg atcttcgaaa ggttgcttga tgagcttatg 1561 tatctgtgtt tgtgttcatt tttgcaggtg tataatagcc gagagctgga tggactggat 1621 catcgctgtc gagtgagtgc tttatttgtt attgcaggtc gttgtgtaga tattcaggta 1681 tttttgcagt tagagaggtc ttcttttttt cctttttacg agagtgatga tccgcttatg 1741 tgcgacaaat acgatgtccg tcaaactgat cctcacccac gggctgtttc tgcaacgcaa 1801 atatgatgca tatacatttt tagaggcctg attttatatg cttattcttt tgtggc //