LOCUS       AK072037                1856 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:J013106J07, full insert
            sequence.
ACCESSION   AK072037
VERSION     AK072037.1
KEYWORDS    CAP trapper; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1856)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..1856
                     /clone="J013106J07"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     CDS             242..1195
                     /db_xref="Osa1:LOC_Os01g69980"
                     /db_xref="RAP-DB:Os01g0924400"
                     /note="(RAP Annotation release2) Similar to Auxin-induced
                     basic helix-loop-helix transcription factor"
                     /note="(Rice Genome Annotation Project) TCP-domain
                     protein, putative, expressed"
                     /note="mapping to R01-TIGRv4S1-001908F (Chr.1: short
                     arm=40804088, long arm=40805944, direction=forward) for
                     TIGR Pseudomol ver4"
                     /protein_id="BAG92795.1"
                     /translation="MDPKFPPPPPLNKTEPTTTTTNQQHHHDEQQQQHRLQIQVHPQQ
                     QEQQDGGGGGGKDQQQQQQMQVVVAAAAGERRMQGLGPKRSSNKDRHTKVDGRGRRIR
                     MPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAATGTGTIPASALASVAPSLP
                     SPNSALSRSHHHHHHMWAAAPPTASAGFAGAGFSGADSGVIGGIMQRMGIPAGIELQG
                     GGAGGLGGGGGGGGGHIGFAPMFASHAAAAAAMPGLELGLSQDGHIGVLAAQSLSQFY
                     HQVGAAGQLQHQHQHHHQQQQQQQDGEDNRDDGESDEESGQ"
BASE COUNT          343 a          526 c          556 g          431 t
ORIGIN      
        1 gaagattttc ttattcttct tcttctcctc ctctctcttc tcctcttctt gcacctcctc
       61 accttctcct ctcctctcct cttcttctcc atcaccatcc acccatccaa ctggtccaac
      121 tcctccaatc gtttgcttct tcttcttcct cttctcgctg ttcttggtgg aggaggagat
      181 tagggtttga ttagggtaga tagagagaga ggggttgggt ttggttggtg tttgtgtgga
      241 gatggacccc aaattccccc cacccccacc gctaaacaaa acggagccca ccaccaccac
      301 caccaaccag cagcatcacc acgatgagca gcagcagcag catcgcctcc agattcaagt
      361 tcatcctcag cagcaggagc agcaggatgg aggtggagga ggagggaagg atcagcagca
      421 gcagcagcag atgcaggtgg tggttgcggc ggcggcgggg gagaggagga tgcaggggct
      481 agggccgaag cggagctcga acaaggaccg ccacaccaag gtggacgggc gggggcggcg
      541 gatccggatg ccggcgctgt gcgccgcccg gatcttccag ctcacgcggg agctcggcca
      601 caagtccgac ggcgagaccg tccagtggct gctccagcag gcggagccgg ccatcgtcgc
      661 cgccacgggg accgggacca tcccggcgtc cgcgctcgcc tccgtcgccc cctccctccc
      721 ttcccccaac tccgccctct ccaggtcgca ccaccaccac caccacatgt gggcggcagc
      781 gccgcccacg gcgtccgccg ggttcgccgg tgcagggttc tccggcgccg actccggggt
      841 gatcggcggg atcatgcagc ggatggggat ccccgccggg atcgagctcc agggcggggg
      901 agcggggggg ttggggggtg ggggtggcgg cggcggtggc cacatcgggt tcgcgcccat
      961 gttcgccagc cacgcggcgg cggcggcggc catgccgggg ctagagctag ggctctcgca
     1021 ggacggccac atcggcgtgc tcgccgcgca gtcgctcagc cagttctacc accaggtcgg
     1081 cgccgccggt cagctgcagc accagcacca gcatcaccat cagcagcagc agcagcagca
     1141 ggacggggag gacaaccgcg acgacggcga gtccgatgag gagtccgggc agtagtagcc
     1201 gcgccacctg aatttgttca tccacgcgtc gtctcttcgg aggagaaaag agaattctag
     1261 gaaggacatg cagctaatgg aggggggaat ggaatgcttt tgttactgtt gggttgttct
     1321 tcatgggggt ttttatgtct gatttttttt cctcgtgtgg tgtcgaagct cgaaagaggc
     1381 tactactttg ctccggcgac ttgttgggat ggatcatgat catcttcagt tgttactcct
     1441 gctgctccat ggatggttgc cggtttatcc ccctccaagt gtttaggtga aagctcaata
     1501 tttcgcactc gacagtcaac acatgacatg atcttcgaaa ggttgcttga tgagcttatg
     1561 tatctgtgtt tgtgttcatt tttgcaggtg tataatagcc gagagctgga tggactggat
     1621 catcgctgtc gagtgagtgc tttatttgtt attgcaggtc gttgtgtaga tattcaggta
     1681 tttttgcagt tagagaggtc ttcttttttt cctttttacg agagtgatga tccgcttatg
     1741 tgcgacaaat acgatgtccg tcaaactgat cctcacccac gggctgtttc tgcaacgcaa
     1801 atatgatgca tatacatttt tagaggcctg attttatatg cttattcttt tgtggc
//