LOCUS AK071939 3742 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013087I01, full insert
sequence.
ACCESSION AK071939
VERSION AK071939.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3742)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3742
/clone="J013087I01"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..3742
/db_xref="Osa1:LOC_Os10g42490"
/db_xref="RAP-DB:Os10g0575600"
/note="(RAP Annotation release2) Homeodomain-related
containing protein"
/note="(Rice Genome Annotation Project) OCL4 protein,
putative, expressed"
/note="mapping to R10-TIGRv4S1-000745R (Chr.10: short
arm=22580778, long arm=22586512, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 815 a 1119 c 1090 g 718 t
ORIGIN
1 gggttactcc tcttcctcgc tcgctcgctc gctgccttag ccttgacctc catcgatatt
61 gcaaccataa agaggaggag gaagaggagg cgagaaagag agagagatcg tcttcttctc
121 cagccagcca gccagccgtg attgatctca agggggaagg cagctgcagg gatcaagaag
181 aaggagaaga agtgatcaag gaaggaaggc cacggaacaa ccgacagggc aggagggcgc
241 tggccggatc gccggagaag gaaccactag ctagctagct agctactcct attgaagata
301 tcgccggccg gacatatgcg caggatgttc ggggactgcc aggtcctgtc gtccatggcc
361 gccatggccg gggccgcctc ctccgccgac gcgctcttcg cctcgccgct catccccaac
421 cccgctctcg ccggcttcat gtcctcctcc gccgccatgc ccttccacca cttctccaac
481 gccgccgcca ccttaatacc taaggaggag gggttgatgg gcggcctcca tgtggccaag
541 gacgagggga tggacctcga gatggacatg gagctcagtg gcggctccgg cagcgcccac
601 ctcgacggcc tcctcagctt cgccgacgtc gacgacgacc acaagccgca gcacagcggc
661 catgaccagc cgcccgacgc cgcccagccc agcggcgccg cggggggcaa cgccaagaag
721 aagcgctacc accgccacac ggcgcaccag atccagcaga tggaggcgct gttcaaggag
781 tgcccgcatc cggacgacaa gcagcggctg aagctgagcc aggaactggg cctcaaacct
841 cgccaggtca agttctggtt ccagaatcgc cggacccaga tgaaggcgca gcaggacagg
901 gcggacaacg tgattgtgcg cgcggagaac gagaacctca agagcgacaa cttccgcctc
961 caggccgcca tccgcaacgt cgtctgcccc aactgcggcc acgccgccgt cctcgccgac
1021 atgtcctacg aggagcagca gctccgcatc gagaacgcca ggctcaaaga cgagcttgac
1081 cgcttggcct gcatcgccac ccgctacggc ggcggcggcg gacggcagcc ggtgctgtcg
1141 acgtcggccc tgagctgcat ctcggcgccg ccgccggtcc tcatgccacc gctcgacctc
1201 gacatgaacg tctactcgcg gcacttcgcc gagcaggcgc cggtcatggg ctgcggcgac
1261 ctcatcccgc cacccgtcgt gccgcagcac gatggcgcgg cggcgtacat gggcgccatg
1321 atggcgcccg tgcaggagca ggacaagcag ctggtggtcg acctcgccgc cacggcggcg
1381 gaccagctcg ccaggatgtg ccgcgccggc gagccgctgt gggtgcggca gcgtggcgcg
1441 gaggtgatgg ccgtggagga gcacgcgcgg atgttcagct ggccggtgga cggcgcgaag
1501 cagggagacg gcggcgcggt ggcgagggcg gaggggacgc gtgacaacgc ggtggtcatc
1561 atgaacagca tcaacttggt ggacgccttc ctcgatgcga acaaatggat ggagctgttc
1621 ccgtcgattg tttgcaaggc aagaacaatc cagatcataa accacggagc tgcgtctggt
1681 cacctcggca gtggaactct cctcttgatg caagcagagg tgcagttctt gtcgcctctg
1741 gtggcggcgc gcgaggtggt gttcttccgt tactgcgtgc acaacgccga cgaggggagc
1801 tgggcgatcg tggatttccc ggcggaaggg tttgaggagg ggctcctcca agcctcggtg
1861 gtcaggtgcc ggcggcggcc gtccggctgc atcatccagg acatgcccaa tggatactcc
1921 agggtggtgt gggtggagca catggagatg gtcggggagg agaagccgct gcagccggtg
1981 ttcagggact acgtcgccag cggcgccgcc ttcggggcca cgcgctggct ctccatcctc
2041 cagcgccagt gcgagcgcct cgccagtgag ctcgcccgta acatcgccga cctcggagtg
2101 atccgcaccc ctgaggcaag aacaaatatg atgaagctgt cgcagcggat gatcaccact
2161 ttctgtgcta acatcagtgc ttctggaacc caatcttgga cggccctctc ggattcaacc
2221 caggacacta tcagggttac aactcggaag aacactgagc ccggacagcc cagcggtgtc
2281 atcctcaccg ctgtctccac aagctggctt ccttttaccc atcagcaggt gtttgagctt
2341 cttgcagatg aacaacagcg ctgccagctt gagattttgt caaacggcgg ctcccttcat
2401 gaggtggcac atattgcaaa tggatcacat ccaaggaatt gcatctctct tcttcgcatt
2461 aacgctgcaa gcaactcgtc acagaatgtg gagctcctgc tgcaggagag cagcacccac
2521 cctgatggtg ggagcctggt ggtgttcgcg acggtggacg tggacgcaat tcaggtgacg
2581 atgagcggcg aggatccttc ctacatccct ctcctccccc tgggcttcgc catcttccct
2641 gccaccagcc catcacctgc tgctgcaccc accatcagct caagcaccac caccaccact
2701 ggcaatggca atggcgaaac cagtagcact cctccaagaa acagcagcag caacaacaac
2761 aatgcagatg agctgctgcc tcccaatggc tgcctcctca ccgtcggcat gcaggtgctg
2821 gccagcgccg taccttctgc caagctcaac ctctcgagtg tcactgcgat caacagccat
2881 gtctgcaacg ccattcacca gatcacagct gcactcaaaa gttcagcagg tggtgctggg
2941 ggtgagccgg cgtccgatca gtagcaaagg agacctggag gagaggggat cggagcaaca
3001 tgggatcaga caccaaaatg cctcccaatt tatttcgcta acatcgcagt ttgtttttct
3061 gttagctctc ggtctggctg gttcatcagg tgcaagggag ggtttgacaa gaagccaaca
3121 ctaacagcta ctcaaatctc tcctctcttc ccgccatatt tctgcctctc aaaatgacga
3181 aaataccccc aaccagccaa caagcaaagc catggggggc attttgatca ttttgggaag
3241 ctacttctgc tgagaaagaa agaaagaaag aaagggtctt gtcaagctct cacttgcacc
3301 aaccagctga ttcatgaatt tgctgacatc agctctgcag gcattttggt cgtgcatcgg
3361 tttcttgcta ctccatccat ccctctttag gttcttcctc cctttcctca tcaaaagtga
3421 gaactgcatg tgaagaaggt tagctccttg ttttgaattt ttgtaataat aagatggaag
3481 aagaagactt ggtagcttga gtgtgtggtt tgtgttaaga tcgagctaga ctttgtgtaa
3541 ggttgaagaa gaagaagaca ttaagcagat tgttattagg agatgagata agagaaagga
3601 ggagaggaga agtcaagagc gaaccagttg tgacccttct tcacactaga agggggtctt
3661 ggttcgggaa ttgacttgtt acctctctgc actctttgtc tgtaaccttt gccctatctt
3721 attattacta ctagtattgt tc
//