LOCUS AK071804 1869 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023110J02, full insert
sequence.
ACCESSION AK071804
VERSION AK071804.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1869)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1869
/clone="J023110J02"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 461..1684
/db_xref="Osa1:LOC_Os05g08610"
/db_xref="RAP-DB:Os05g0179000"
/note="(RAP Annotation release2) Zinc finger, RING-type
domain containing protein"
/note="(Rice Genome Annotation Project) protein binding
protein, putative, expressed"
/note="mapping to R05-TIGRv4S1-000237F (Chr.5: short
arm=4688655, long arm=4693404, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG92704.1"
/translation="MAVPPVESETRSEETDNFPLLADHMENTGHHAHAVDIPWDSSPS
TSRRDNHNGFDQLPRILEGSPGTSTPSNSQNGPLARRDDNRGRRQPSPLNSGCWISVE
LVVNVSQIIAAICVLSVSRNEHPHSPLFEWVIGYTVGCTATLPHLYWRYLHRNLPTTG
QEPTVQNIPPNNTPEANSYGVTGTNGVSRNNEATVNPRFQAFADHFKMALDCFFAVWF
VVGNVWVFGGHSSAHDAPNLYRLCIAFLTFSCIGYAMPFILCALICCCLPCIISILGF
REDLNQNRGASAETINALGTCKFKSKKTRDGDGNEVGVGVVAAGTNKERVISAEDAVC
CICLARYVDNDDLRELPCAHFFHKDCVDKWLKINALCPLCKAEIDGVSTSAPAIGFGR
RHSDNRVGNDIESQL"
BASE COUNT 437 a 437 c 428 g 567 t
ORIGIN
1 gaggagtcaa gtcgccgact tttggagttc tcctcgcccc agctcggtaa attccttcgc
61 tttttctccg ctggttcgga gatttccatg ttcacttttg tttttttttt taattaaggg
121 ctttgctttg atggaagggt tgggtactgg ttccttccct ccggatcaat cttgcttctt
181 gcgctcaccc aacctagtaa ttttttcctc tcccgatttg tttaatgcta atctaggtgg
241 ttgatgatgc ttgcgagcca ggcattgatt cggctttaag cttgcctgct tgcttcgccg
301 tcttgttctt tgagttcttg gttttcatgg atccttgatc cgatttaggg gttgctgctg
361 ctagccgtgg ttggtgagac ggttcttgga gaagggggat ttcttgaggt gcttttctgg
421 gaggtgtaac caactaaatt cctatgctac cttctggttg atggccgtcc ctcctgttga
481 atcagaaaca agaagtgaag aaacagataa tttcccttta cttgcagacc acatggaaaa
541 tactggacat catgcacatg cagttgatat cccatgggat tcttcaccat cgacatctcg
601 ccgagataat cataatggat ttgatcaatt acctcgtatc ttagaaggtt ctcctgggac
661 atctactcca tctaactctc agaatggtcc tctagcaaga agagatgata atcgtggtcg
721 tcgtcagcct agtcccttga attctggttg ctggatctca gttgagctag ttgtaaatgt
781 tagccagatc atagcagcta tttgtgttct gtcagtatca aggaatgagc atccacactc
841 tccgttattt gagtgggtca ttggttatac agtaggttgt actgccacgc tgcctcatct
901 ttactggcgc tatctccatc gcaacctccc aaccactggg caagagccaa cagttcagaa
961 tatccctcca aacaacaccc ctgaagctaa ttcatatgga gtaaccggca caaatggagt
1021 ctcaagaaac aatgaggcaa cagtaaatcc aaggttccaa gcttttgctg atcacttcaa
1081 aatggctctg gactgtttct ttgctgtgtg gttcgttgtg ggaaatgtat gggtatttgg
1141 tggacattct tctgctcacg acgcgcccaa cttgtacagg ttgtgtattg ccttcctcac
1201 attcagctgc atcggctatg ctatgccttt catcctctgc gcattgatat gttgctgcct
1261 accctgcata atctctatct tgggatttcg ggaagatcta aaccaaaaca gaggagctag
1321 tgcggaaaca atcaatgcct tgggaacatg caagttcaag tcaaagaaaa ctcgtgatgg
1381 agatggaaac gaagttggtg tcggtgttgt ggctgctgga acaaacaagg agcgagtcat
1441 ttctgcagaa gatgctgtct gctgcatctg cttggccaga tatgtcgata acgatgatct
1501 ccgagagctc ccttgtgcgc acttcttcca caaggattgt gtggacaaat ggctcaagat
1561 aaacgcgctg tgcccccttt gcaaggctga gatagatggt gtctccacaa gtgctccagc
1621 cattggcttt gggcgtcgcc acagcgacaa cagggtagga aacgacattg aatcacaact
1681 ataactctct tcccacttcg ttggcagcgt ggatcacgcc tttgatgagg ccttccacac
1741 atcaacctgt aaattataga ggtagacatc aagatgtaaa gggtcctctt acgatccaac
1801 aaagttcttt tctgaatgac tactgcctcc actgtcagta tatattgctt ccagcatttg
1861 tttcttctc
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