LOCUS AK071725 1923 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023113B05, full insert
sequence.
ACCESSION AK071725
VERSION AK071725.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1923)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1923
/clone="J023113B05"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1923
/db_xref="Osa1:LOC_Os08g06630"
/note="(Rice Genome Annotation Project) RNA polymerase
sigma factor rpoD, putative, expressed"
/note="mapping to R08-TIGRv4S1-000157F (Chr.8: short
arm=3726097, long arm=3729794, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 487 a 502 c 529 g 405 t
ORIGIN
1 gcatggcctc ccgccctctc cgcctcctct accctatcct ctccctccac accccactcc
61 gaccaccacc accacctcgc ccgcggtaac gccgccgccg tcgctcgccg cggtaaaacc
121 agcgcgcgcg agagagtggg tgtccgtgtg gcctactact tgcttcctcg gcgcgcgcgg
181 cgcgtgtgtg cctcgcatcc tccaccacca ctagtgcagc caagtgcgtg cgtgtgtgtg
241 tgtgcggaca ccgttgctgc cgccgccgcc gccgccgcgc gcagggtggt gacaagatga
301 cggcgacgcc agcggtgatc gggctgagcg cggggaacag gctgctgagc gcgtcgttcg
361 ggccgaccga cctgatgccc gacgccgtcg cccgcctcgc gcgccgccca cgcccatgac
421 ctcgagtcct ccctcgaggc catcgtgctg ctgcagaggt ccatgctcga gaagcagtgg
481 gagctcccct tcgacgacga caaccacgcc atggccatcg gcttggccga ggatgacgac
541 gacaccagca aggccaccgt cgtcgtggcg cggtccagtg tctcggcgcg gcagaggagg
601 atgagcgggc ggcggcgggg gaggaccaag aacggcgcgg cgcacttcgc cgtcagcccc
661 gagctgatcc agagcaggaa caggatctac ctcaggggca ccgtcagcaa ggagctcctc
721 acgcacaagc aggtcgtcca cctctcccac aagatcaagg atggcatctg gctgcagcag
781 caaagatcaa agctgaaaga gaagctggga aatgagccct catacaaaca gctggcgcat
841 tcgctgaaga tatcaccgcc cgagctacga tcaaggatgc acgagtcgtt tcttgcaagg
901 gagatgctaa caatgagcaa cctccgtttg gtcatttcca ttgcccagaa gtatgataac
961 cttggtgttg agttggctga cctcattcag ggtggtctga tagggttact ccgtgggatc
1021 gaaaaatttg atgcatccag gggctttaga atttccactt atgtatactg gtggatacgc
1081 cagggtgttt caagagcatt agctgaaaac tcaaaaacat tcaggcttcc aacttatctg
1141 cacgagcggc tgattgcgat tcgtggtgca aagtatgagt tggaagatca aggaattgct
1201 ccaacaatag aaaacatagc agggtcactc aacatatcag aaaagaaagt actcaatgct
1261 acagaggctg tgaacaaggt tctttcgttg gatcaacaag catttccatc cttaaacggc
1321 ttacctggag agacactgca cagttacata gaggatcaaa atgtcgcaaa tgatccatgg
1381 catggatttg aggagtggta tctcaaggag gaagtcaaca agcttttaaa ctcaactctc
1441 aacgagcgtg agagggacat tatccggtta tatcatggca taggaaaaca atgccataca
1501 tgggaggata ttagcagaca attcgggttg tcgagggaga gggtgaggca agtaggactc
1561 atcgcaatgg agaagctgaa gcatgctgcg aggaggaaaa atttggaggc attgcttgag
1621 gattattgag ttgaggggct ttttgtttga gtcagatcca caaacacagc ggttgtatat
1681 actcagaaaa catagggtac atccttcaaa aggcgtactg ccactcacat gaaagtaatt
1741 atacgtgtac attttgtgac attagggaga tgcatgatca aaatctctat gcctgtgtta
1801 tgaccaaggc aatcaggaaa cagagagatg atgtttttcc ttcaaggttt acaattattc
1861 tgtaatatat atgtaagtat gatttagctt gatcaataga gcaacactta aaagttctga
1921 gcc
//