LOCUS AK071556 2018 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023101A16, full insert
sequence.
ACCESSION AK071556
VERSION AK071556.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2018)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2018
/clone="J023101A16"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2018
/db_xref="Osa1:LOC_Os03g13300"
/db_xref="RAP-DB:Os03g0236200"
/note="(RAP Annotation release2) Similar to Glutamate
decarboxylase isozyme 3 (EC 4.1.1.15)"
/note="(Rice Genome Annotation Project) glutamate
decarboxylase, putative, expressed"
/note="mapping to R03-TIGRv4S1-000485F (Chr.3: short
arm=7160192, long arm=7163149, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 426 a 618 c 582 g 392 t
ORIGIN
1 gacaccaaaa caactcgcat ccgtttcgtt caagtccccc cccgaaaaga gcttagtaga
61 agcgcgccac agagccttct cgacctggct ctcctctagc cacctctgct tcttcttctt
121 cttcttcttc ttcttcgtct gatcgccacc gaggctaaag ccaccaggag gagcaggttg
181 atagctcggc aggcaagatg gtgctctcca aggccgtctc cgagagtgac atgtccgtgc
241 actccacctt cgcctcccgc tacgtccgcg cctccctccc aaggtaccgg atgccggaga
301 actcgatccc gaaggaggcg gcgtaccaga tcatcaacga cgagctgatg ctggacggca
361 acccgcggct gaacctggcg tcgttcgtca ccacgtggat ggagcccgag tgcgacaagc
421 tcatcatggc cgccatcaac aagaactacg tcgacatgga cgagtacccc gtcaccaccg
481 agctccagaa ccggtgcgtg aacatgatcg cgcacctgtt ccacgcgccg ctcggggagg
541 acgagacggc ggtgggcgtg ggcacggtgg gttcgtcgga ggccatcatg ctggccgggc
601 tggccttcaa gcggcggtgg cagaacaagc gcaaggccga ggggaagccg ttcgacaagc
661 ccaacatcat caccggcgcc aacgtgcagg tgtgctggga gaagttcgcc cgctacttcg
721 aggtggagct caaggaggtg aagctccgcg acggctacta cgtcatggac cccgagaagg
781 ccgtcgacat ggtcaacgag aacaccatct gcgtcgccgc catcctcggc tccaccctca
841 acggcgagtt cgaggacgtc aagctactca acgacctcct cgacaaggag aacaaggaga
901 ctgggtggga gacgccgatc cacgtggacg cggcgagcgg cgggttcatc gcgccgttcc
961 tgtacccgga gctggagtgg gacttccggc tgccgtgggt gaagagcatc aacgtgagcg
1021 gtcacaagta cgggctcgtc tacgccggca tcggctggtg catctggcgc aacaaggagg
1081 acctgcccga ggagctcatc ttccacatca actacctcgg caccgaccag ccaaccttca
1141 ccctcaactt ctccaagggc tccagccagg tcatcgccca gtactaccag ctcatccgcc
1201 acggcttcga ggggtacagg aacatcatgg agaactgcca cgagaacgcg atggtgctga
1261 aggaagggct ggtgaagacg gggaggttcg acatcgtgtc caaggacgaa ggggtgccgc
1321 tggtggcgtt ctcgctcaag gaccggagcc ggcacgacga gttcgagatc tccgacatgc
1381 tgcgccgctt cggctggatc gtgccggcgt acaccatgcc gcccgacgcc cagcacgtca
1441 cggtgctccg cgtggtcatc cgggaggagt tcagccgcac cctcgccgag cgcctcgtcc
1501 tcgacatcga gaaggtgatg taccagctcg acgcgctccc ctccaggctc atgccccccg
1561 tgccgccggc gccgctgctg gtggtcgcca agaagtcgga gctcgagacg cagcggtcgg
1621 tgacggaggc gtggaagaag ttcgtgctcg ccaagaggac caacggcgtc tgctagtctc
1681 aattagcgac agcgccacgg cctacaaatc cacaaatcaa gacgctgctg attgatatga
1741 ttaattacat tcatggtgtg agctaccatt actgtatttt ttttttaccg tgctaatttg
1801 agtggagcct tcgattctag gtccaaggta ctagtagagt tcataaccaa aagccatgct
1861 cttgcttttg tttctccttc tgataatctg tgcagctgcg ctgcagcctg cactcatctc
1921 ccgagagttg taagttgaaa ctgtacgatt ttgatgttcc ctgttctagt gtaagtgcca
1981 attattgagt ggtatggaaa atatttcttc aagaaacc
//