LOCUS AK071522 1531 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023099N14, full insert
sequence.
ACCESSION AK071522
VERSION AK071522.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1531)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1531
/clone="J023099N14"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1531
/db_xref="Osa1:LOC_Os07g23900"
/db_xref="RAP-DB:Os07g0421000"
/note="(RAP Annotation release2) Cyclin-like F-box domain
containing protein"
/note="(Rice Genome Annotation Project) F-box domain
containing protein, expressed"
/note="mapping to R07-TIGRv4S1-000423R (Chr.7: short
arm=13511941, long arm=13514082, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 314 a 470 c 397 g 350 t
ORIGIN
1 gggtcagctt cgaacccagg caagtagaag aacccccaaa ttcccccttg tcggcctatc
61 cccacccaaa accctcgcgt ccacccgccc ccgccgccga cgacctcgcc agaggagctc
121 atggacgacg ccatcgccgc gctcccgccg gagctcgtct ccgagatcct cctccgcctc
181 cggccggacg agcccgagca cctcttccgc gcgtcactcg tctgcaaggc atggctccgc
241 gccatctgcg accccgtctt cctccgccgc taccgcgcct tccacggatc cccgccgctg
301 ctcggcctcc tccacaggct ccgggtcata gacggggacc ccgccccgcg cctcgcccgc
361 accacggcgg cgcccctctc ccccgacccg gccttcctcc gggccctcga ctgccgccat
421 ggccgcgtcc tcctccacgc gtcgaacctc ggcctcatcg tctgggaccc cgtcacgggc
481 gagcagcacc gcctgccgga atctggcatc ccgtggctga tctacaccgc cgcagtgttc
541 tgcgccgtcg gcggctgtga ccacctcgac tgccacggcg gccccttccg agtggtcttc
601 gtggccaccg acgacgacga cgaactcgtc aaggggagtg tgtattcatc ggagaccggt
661 gtgtggagca cgccagcaac tcttgatgat ggctatcaat cctgggaaga gcgttggcag
721 gcggcccgca gtagaggcga atactaccgc acaccttatg tccatcctaa gcgatgtgcc
781 cttgtcggag atgaaatcta cttcacactt cggaacggca atacgatcat cgagtacaac
841 tggggaaaga accgcttatt tatgtttgac ccgccgacat cggacttgta ctacattgcc
901 ctcacggtga tggagaatgg ttcactgggg tttgccggca ttgagggatc cagccttaat
961 gtgtggtcga ggaaggtgaa tccacaaggg gctgcagaat gggtactatg caggatcatc
1021 gaactggaga aaattatacc tgtagtcgat ctcagtgatg aagcatgtgt ggttggctct
1081 gcagagggtc tgggtgtcat cttcgtgagc acaggcgttg gcttattcac gatcgagctc
1141 aagtcaaggc gggtgaagaa gcttgaagag cctggtgtct actttagtgt cttaccctac
1201 atgagcttct acactcctga tcgtggcaca ttgttatcgc tagcaaggac tcactgatct
1261 ttgatctcat gctcaagagt aacatgttgc aaaatggaca aatccatcgt cttggatctg
1321 ctgcgattga catcttccag agatactact atgaagttgt ttattttctg ttgggcaatg
1381 taggtatgag caattcgagt catcatgttc gaatatggtc atcgtatcaa attcatcaac
1441 catgaactgt attcggttta acatgtctgg catatttcag ttactttttg gtttatattg
1501 ggctaaggta catgaaacaa aaattatatt c
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