LOCUS AK071432 2488 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023092D01, full insert
sequence.
ACCESSION AK071432
VERSION AK071432.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2488)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2488
/clone="J023092D01"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2488
/db_xref="Osa1:LOC_Os04g42900"
/db_xref="RAP-DB:Os04g0508000"
/note="(RAP Annotation release2) Protein of unknown
function DUF231, plant domain containing protein"
/note="(Rice Genome Annotation Project) expressed protein"
/note="mapping to R04-TIGRv4S1-000737R (Chr.4: short
arm=25162622, long arm=25165852, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 543 a 747 c 792 g 406 t
ORIGIN
1 ggctcgcttc actccccagc aagttgcggc ggcggcgcgc ggctagccgg acacaccgat
61 cacgctgact agctagtact agtagctatt gaatggccgg cgcgtggagg aaggcgtggc
121 tgtcgatgct ggaccgaggc ggcggatcag gcgcgggcgg cggaggcggc gggagcagcg
181 ggtcgctgca cgtgcacctc cacggcctcc tctccccgtc ctcgtcgtcg tcgtcgctca
241 acggttacaa gcgcggcggc ggaaagcacg gcggcggtgg tggttgcggc ggcggccatg
301 tgatgacgag tagcaaggcc gtgctggcat gcttctccgt cgcgctcgtg gtggccttct
361 tctacgtctc cgtcgccagc ggccccaccg cggacgccgc ctcgttccct tccccgacgc
421 gggcgtcgtc gtcgtcactc ctgtcgtggc tgtcgtcgaa ctcgacgtcg gcggcggcgc
481 tgccgaggag gtctctcccg cctcacccgc ccattcctcc tgccggcggc ggcgctgatc
541 tgcgtaacac cgcgcgtaga acgcagagcg gcgccgaggg ctcggggttg ccggcgccgg
601 cggcggagca aacggccaaa ccgcgggttt ctgatctccg gtcgggcgcc gggaacgcca
661 ccgtcggtga cgtcgacggg gatcaacgcg tcgggaatgg cacgcgatca cgacagcagc
721 gagaggaaac cgcaacacca atgccgcgat ggcagagaag ggacgaggag aagaactcca
781 cccaccacgc catcgtcgcc gctcccggca actccaccga cgccccggcc ccaccactga
841 actcgacggc gacgccgcga gccgcagcag cagccgcagc cacgccatcg acgccgccgg
901 agaggaaggc tgacacccac cacagccatc ggagaggcat caggcacaag cagcagcagc
961 atcaccagca cccgaggcgg cgaaaggaca ccgtcctcct cgcggcggcg gcggcgcgcc
1021 aagaagctcc cgatcgccgc gacgacggcg ccgccatgcc attgcccgcc gcgacgatca
1081 tcaacaccag caccgtcggc gacaaccgcg tcgtctggac gtccggcgtg cagagtggcc
1141 tggtctcctt cgccaagtgc gacgtgttca gtggccgctg ggtgcgcgat gacgacgagg
1201 gcggcggcgc ctacccgttc tacccgccgg gctcgtgccc ccacatcgac gacgacttca
1261 actgccacaa gaacggccgc gccgacaccg gcttcctcag gtggaggtgg cagccgcacg
1321 gctgcgacat ccccaggctg aacccgattg attttctgga gaggctgaga gggcagagga
1381 tcatattcgt cggcgactca ctgaaccgca acatgtggga gtctctggtg tgcattctgc
1441 ggcatggtgt cagggacaag aggaggatgt atgaagcgtc agggaggaac cagttcaaga
1501 ccaggggata ctactccttc agattcaggg attacaattg ctccgtggat ttcataagat
1561 caatatttct agtcaaggag atgatcaacg agaccaaagg cggcgccgtg gtggacgcta
1621 agttgagatt ggatgaactc gatgaaacga ctccggcgta ccggactgcc gacatcgtcg
1681 tcttcaacac cggccactgg tggacgcact ggaaaacatc aagagggctg aattactacc
1741 aagaaggtaa ctacgtgcac cccagcctcg aggtgatgga cgcatacaag agagctctga
1801 ccacctgggc tagatgggtc gacaagaaca tcgactccac aagaactcag gtggtgttca
1861 gaggatactc cctcacacat ttcaggggag ggcagtggaa ctcaggaggg agatgccaca
1921 gggagacgga gccgatcttc aaccggacgc acctcgccga gtacccggag aagatgagga
1981 tcctggagca ggtgctgggg cggatgagga cgccggtgat ctacctcaac atcagcgcca
2041 tgacggacta ccgcaaggac gcccacccgt cggtgtaccg ggtgcggtac gagacggagg
2101 aggagcggat ggcggcggtg gcgaagcagg actgcagcca ctggtgcctg cccggcgtgc
2161 cggattcctg gaacgagctg ctgtacgcct cgctgctcca ggcagggaga ggatcgtgga
2221 gactatgaga agttgatttc tcaaaatctc ttgacagttg acacacaagg cacaggcgaa
2281 aaaaaaaaga tgagtggtaa catggttcat gttagaggtg cacataaaca caggaaaatc
2341 ctgcagtgag tagatcaggt agaagcagat taatcgttaa taagatgatg aggttttaat
2401 tctttcctcc cggtagttca tgtacatatg agagcttaat aactgatgta ccatctgaag
2461 aatatcatca catattcata tcgaaacc
//