LOCUS AK071432 2488 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J023092D01, full insert sequence. ACCESSION AK071432 VERSION AK071432.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2488) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..2488 /clone="J023092D01" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..2488 /db_xref="Osa1:LOC_Os04g42900" /db_xref="RAP-DB:Os04g0508000" /note="(RAP Annotation release2) Protein of unknown function DUF231, plant domain containing protein" /note="(Rice Genome Annotation Project) expressed protein" /note="mapping to R04-TIGRv4S1-000737R (Chr.4: short arm=25162622, long arm=25165852, direction=reverse) for TIGR Pseudomol ver4" BASE COUNT 543 a 747 c 792 g 406 t ORIGIN 1 ggctcgcttc actccccagc aagttgcggc ggcggcgcgc ggctagccgg acacaccgat 61 cacgctgact agctagtact agtagctatt gaatggccgg cgcgtggagg aaggcgtggc 121 tgtcgatgct ggaccgaggc ggcggatcag gcgcgggcgg cggaggcggc gggagcagcg 181 ggtcgctgca cgtgcacctc cacggcctcc tctccccgtc ctcgtcgtcg tcgtcgctca 241 acggttacaa gcgcggcggc ggaaagcacg gcggcggtgg tggttgcggc ggcggccatg 301 tgatgacgag tagcaaggcc gtgctggcat gcttctccgt cgcgctcgtg gtggccttct 361 tctacgtctc cgtcgccagc ggccccaccg cggacgccgc ctcgttccct tccccgacgc 421 gggcgtcgtc gtcgtcactc ctgtcgtggc tgtcgtcgaa ctcgacgtcg gcggcggcgc 481 tgccgaggag gtctctcccg cctcacccgc ccattcctcc tgccggcggc ggcgctgatc 541 tgcgtaacac cgcgcgtaga acgcagagcg gcgccgaggg ctcggggttg ccggcgccgg 601 cggcggagca aacggccaaa ccgcgggttt ctgatctccg gtcgggcgcc gggaacgcca 661 ccgtcggtga cgtcgacggg gatcaacgcg tcgggaatgg cacgcgatca cgacagcagc 721 gagaggaaac cgcaacacca atgccgcgat ggcagagaag ggacgaggag aagaactcca 781 cccaccacgc catcgtcgcc gctcccggca actccaccga cgccccggcc ccaccactga 841 actcgacggc gacgccgcga gccgcagcag cagccgcagc cacgccatcg acgccgccgg 901 agaggaaggc tgacacccac cacagccatc ggagaggcat caggcacaag cagcagcagc 961 atcaccagca cccgaggcgg cgaaaggaca ccgtcctcct cgcggcggcg gcggcgcgcc 1021 aagaagctcc cgatcgccgc gacgacggcg ccgccatgcc attgcccgcc gcgacgatca 1081 tcaacaccag caccgtcggc gacaaccgcg tcgtctggac gtccggcgtg cagagtggcc 1141 tggtctcctt cgccaagtgc gacgtgttca gtggccgctg ggtgcgcgat gacgacgagg 1201 gcggcggcgc ctacccgttc tacccgccgg gctcgtgccc ccacatcgac gacgacttca 1261 actgccacaa gaacggccgc gccgacaccg gcttcctcag gtggaggtgg cagccgcacg 1321 gctgcgacat ccccaggctg aacccgattg attttctgga gaggctgaga gggcagagga 1381 tcatattcgt cggcgactca ctgaaccgca acatgtggga gtctctggtg tgcattctgc 1441 ggcatggtgt cagggacaag aggaggatgt atgaagcgtc agggaggaac cagttcaaga 1501 ccaggggata ctactccttc agattcaggg attacaattg ctccgtggat ttcataagat 1561 caatatttct agtcaaggag atgatcaacg agaccaaagg cggcgccgtg gtggacgcta 1621 agttgagatt ggatgaactc gatgaaacga ctccggcgta ccggactgcc gacatcgtcg 1681 tcttcaacac cggccactgg tggacgcact ggaaaacatc aagagggctg aattactacc 1741 aagaaggtaa ctacgtgcac cccagcctcg aggtgatgga cgcatacaag agagctctga 1801 ccacctgggc tagatgggtc gacaagaaca tcgactccac aagaactcag gtggtgttca 1861 gaggatactc cctcacacat ttcaggggag ggcagtggaa ctcaggaggg agatgccaca 1921 gggagacgga gccgatcttc aaccggacgc acctcgccga gtacccggag aagatgagga 1981 tcctggagca ggtgctgggg cggatgagga cgccggtgat ctacctcaac atcagcgcca 2041 tgacggacta ccgcaaggac gcccacccgt cggtgtaccg ggtgcggtac gagacggagg 2101 aggagcggat ggcggcggtg gcgaagcagg actgcagcca ctggtgcctg cccggcgtgc 2161 cggattcctg gaacgagctg ctgtacgcct cgctgctcca ggcagggaga ggatcgtgga 2221 gactatgaga agttgatttc tcaaaatctc ttgacagttg acacacaagg cacaggcgaa 2281 aaaaaaaaga tgagtggtaa catggttcat gttagaggtg cacataaaca caggaaaatc 2341 ctgcagtgag tagatcaggt agaagcagat taatcgttaa taagatgatg aggttttaat 2401 tctttcctcc cggtagttca tgtacatatg agagcttaat aactgatgta ccatctgaag 2461 aatatcatca catattcata tcgaaacc //