LOCUS AK071343 1658 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023091A02, full insert
sequence.
ACCESSION AK071343
VERSION AK071343.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1658)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1658
/clone="J023091A02"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1658
/db_xref="Osa1:LOC_Os03g08050"
/note="(Rice Genome Annotation Project) elongation factor
1-alpha, putative, expressed"
/note="mapping to R03-TIGRv4S1-000296F (Chr.3: short
arm=4089487, long arm=4092699, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 368 a 443 c 442 g 405 t
ORIGIN
1 ccccgtctca ccctagccgc cgccgcctcc tcctcctctc gccttctccc gtcttctcct
61 tcgagttagc tacctcctta ttcaaccatg ggtaaggaga agacgcacat caacatcgtg
121 gtcattggcc acgtcgactc cggcaagtcg accaccacgg gccatctgat ttacaagctt
181 ggaggtatcg acaagcgtgt gatcgagagg ttcgagaagg aagccgctga gatgaacaag
241 aggtccttca agtacgcgtg ggtgcttgac aagctcaagg ccgagcgtga gagaggtatc
301 accatcgata ttgccctgtg gaagttcgag accaccaagt actactgcac ggtcatcgat
361 gcccctggtc accgtgactt catcaagaac atgatcacgg gtacctccca ggctgactgt
421 gccgtgctca tcattgactc caccactggt ggttttgagg ctggtatctc caaggatggc
481 cagacccgtg agcacgctct tcttgctttc actcttggag tgaagcagat gatctgctgc
541 tgcaacaaga tggatgccac cactcccaag tactccaagg cccgttatga tgaaatcgtg
601 aaggaagtct catcctacct gaagaaggtc ggctacaatc ctgacaagat tcccttcgtt
661 cccatctctg ggtttgaggt gacaacatga ttgagaggtc caccaacctt gactggtaca
721 agggccccac cttgcttgag gctcttgacc agatcaacga gcccaagagg ccatcagaca
781 agcccctgcg tcttcccctt caggacgtgt acaagatcgg tggtattggc accgtgcctg
841 tgggtcgtgt tgagactgga gtcctcaagc ctggtatggt ggtgaccttt ggtcccagtg
901 gcctgaccac tgaggtcaag tcggttgaga tgcaccacga ggctctccag gaggctcttc
961 ctggtgacaa cgtcgggttc aacgtgaaga acgttgcggt gaaggatctg aagcgtgggt
1021 acgtggcctc caactccaag gatgaccctg ccaaggaggc tgccagcttc acctcccagg
1081 tgatcatcat gaaccaccct gggcagatcg gtaacggcta tgctccagtg ctggactgcc
1141 acacctccca cattgctgtc aagtttgctg agctggtgac caagattgac agacgatctg
1201 gcaaggagct ggagaaggag cccaagttct tgaagaacgg tgatgctggt atggtcaaga
1261 tgattcctac caagcccatg gttgtggaga ccttctctga gtaccctcct cttggtcgtt
1321 ttgcggtgcg tgacatgagg caaacggtgg ctgttggcgt catcaagaac gtggagaaga
1381 aggacccaac cggtgccaag gtgaccaagg ctgccgccaa gaagaagtga gcctcgttca
1441 aatggtggtt tgcatgtctg cagttgagat atctagttct agtatttgtt aagttttgcc
1501 cacggccatg gctctcgttt catggaccgt taatatctgc tcgcaatgtg cactatgtca
1561 gtcgtttaat actcgtttat ttctgttcgg ttaaaactga tgctctgagt ccgattattg
1621 tccatcggct gttttggaat gcgagtattt acattgcc
//