LOCUS AK071310 1872 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023083N24, full insert
sequence.
ACCESSION AK071310
VERSION AK071310.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1872)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1872
/clone="J023083N24"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1872
/db_xref="Osa1:LOC_Os02g46850"
/db_xref="RAP-DB:Os02g0695800"
/note="(RAP Annotation release2) Similar to Oligopeptide
transporter 7 (AtOPT7)"
/note="(Rice Genome Annotation Project) oligopeptide
transporter 4, putative, expressed"
/note="mapping to R02-TIGRv4S1-001204R (Chr.2: short
arm=28576252, long arm=28578312, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 414 a 523 c 448 g 487 t
ORIGIN
1 gggagaggaa gcagtgaaag attagcggcg gtgcaagaga agaggagaga gcgagacgtc
61 gcctgcgatg acaccggcct cacccgccgc cgacaccgtc atcgccgccg cagccgcagc
121 cgctgacatc catctcatgg gtgtgctggg tcttctccaa gtccgtcacg gcgcaacagc
181 tgggctccgg cttgaagggc ttgggcgttg gggccttctc gctcgactgg acagctatct
241 cttccttcct cttcagcccg ctcatctcgc ccttctttgc caccgccaac atcttcgtcg
301 gcttcgtgct cttcctctat gtgctcgttc ccatagcata ctggggtttc gacctgtaca
361 atgccaagac attccccatc ttctcctcgc acctattcat gtccaatggc acgagctacg
421 atatcacagc catcgtgaac gacaagtttg agcttgatat cgatgcttac aataagcttg
481 gcaggatcaa cctcagtgtg ttcttcgcgc tcgcttatgg tctaagtttt gccaccattg
541 cctccactgt cacccacgtg gcctcttcta tggaaaggaa atctatcacc gttttcgagc
601 ttcgcagaag gagaagcctg atatccacac taggctgatg aagaagtacg atgacatacc
661 agtgtggtgg ttctactcac tgatggcgct ttcgatgaca gtggcactta tcctctgcac
721 tgtcctgaag catgaggtcc agcttccatg gtggggtcta ctatttgcct gtggcatggc
781 cttcatcttc accctaccca tcagcatcat ctctgcgaca accaaccaga cacctggtct
841 gaacgtcatc acggagtatg ccattgggtt gataatccct ggtcatccca tcgccaacgt
901 ctgtttcaag gtgtatggct acatgagcat gtctcaggct attgccttcc tctcagactt
961 caaacttggc cactatatga agattccccc aaaatccatg ttcctagttc agtttattgg
1021 cacaattgtg gccggcacgg tcaaccttgg ggtggcatgg tggctgctcg gctccatcca
1081 tgacatttgt caggattcgc tcccagctga cagcccatgg acatgcccca acgaccgagt
1141 cttcttcgat gcatcggtca tttggggcct cattggccca atccgcatct ttggaccaca
1201 tggcaactac agtgccctca actggttctt cctcatcggc gcagcaggcc ctgttatcgt
1261 gtacatcttc cacaagatgt tcccaaacaa gaaatggata acactgacta acttaccagt
1321 gctcatcggc gcgacagcct caatgccacc ggcgacggct gtgaattaca actcttggct
1381 gctctttggt accatcttca atttcttcgt gttccggtac cggaagaagt ggtgggagag
1441 gtacaactac attctctctg ccgcactcga cgctggcgtg gctttcatgg cggtgctgct
1501 gtacttctca ctatccatgg agaaccggag catcgactgg tggggcacgg caggagaaca
1561 ctgcccactg gccacatgtc ccactgcaaa aggggttgac ttgggtccaa caagcgtttg
1621 ccctgtgttc taagctaaat ctctacttca tgctacaagg tacagctgca ggatagttat
1681 gatccattcg agttatgttt acagtcttta gattccagct tcatggaagt aaatcctctg
1741 gtatgtgtaa aggttatagg ttgatattgc atcgcgcaca aggcaaaaga attgaacaat
1801 gctggaacat aaatgctgta atataccagg tcatttgggc aatgcaaagg catatgttgg
1861 tacttgaatg ct
//