LOCUS AK071251 1502 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023087H21, full insert
sequence.
ACCESSION AK071251
VERSION AK071251.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1502)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1502
/clone="J023087H21"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 124..1119
/db_xref="Osa1:LOC_Os02g48290"
/db_xref="RAP-DB:Os02g0713400"
/note="(RAP Annotation release2) Similar to Thioredoxin
reductase 1 (EC 1.8.1.9) (NADPH-dependent thioredoxin
reductase 1) (NTR 1)"
/note="(Rice Genome Annotation Project) thioredoxin
reductase 2, putative, expressed"
/note="mapping to R02-TIGRv4S1-001241F (Chr.2: short
arm=29545078, long arm=29548378, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG92394.1"
/translation="MEGSAGAPLRTRVCIIGSGPSAHTAAIYAARAELKPVLFEGWLA
NDIAAGGQLTTTTDVENFPGFPEGILGGELMDRCRAQSLRFGTSIISETVTAVDFSAR
PFRVASDSTTVLADAVVVATGAVARRLHFAGSDAYWNRGISACAVCDGAAPIFRNKPI
AVIGGGDSAMEESNFLTKYGSHVYIIHRRNTFRASKIMQARALSNPKIQVFWDSEVVE
AYGGEGGGPLAGVKVKNLVTGKISDLQVSGLFFAIGHEPATKFLGGQLELDADGYVAT
KPGSTHTSVKGVFAAGDVQDKKYRQAITAAGSGCMAALDAEHYLQEVGAQEGKAD"
BASE COUNT 272 a 461 c 440 g 329 t
ORIGIN
1 gggtgtccgt tgattggctc gtcgcctcct cccttctcgg tctgacggtc tgaccagtgc
61 cgggtaggaa gcgtaatttt gaggagagac tccgacccgc gccgccgccg ccgcagccaa
121 gccatggagg gatccgccgg ggcgccgctc cgcacgcgcg tgtgcatcat cgggagcggg
181 ccgtcggcgc acacggcggc gatctacgcc gcccgcgcgg agctcaagcc cgtgctcttc
241 gagggctggc tcgccaacga catcgcggcg gggggccagc tcaccaccac caccgacgtc
301 gagaacttcc cggggttccc cgaggggatc ctcggcggcg agctcatgga tcggtgccgc
361 gcccagtccc tccggttcgg caccagcatc atctccgaga ccgtcaccgc ggtcgacttc
421 tccgcccgcc ccttccgcgt cgcctccgac tccaccaccg tgctcgccga cgccgtcgtc
481 gtcgccaccg gcgccgtcgc ccggcgactc cacttcgccg gctccgacgc ctactggaac
541 cgcggcatct ccgcctgcgc cgtctgcgac ggggccgccc caatcttcag gaacaaaccc
601 atcgccgtca tcggcggcgg cgactccgcc atggaggagt ccaacttcct caccaagtac
661 ggctcccatg tgtacatcat ccaccgccgc aacaccttcc gcgcctccaa gatcatgcag
721 gccagggcgt tgtcaaaccc caagatccag gttttctggg actctgaggt cgtcgaggcc
781 tacggcggcg agggtggagg tccattggct ggtgtcaagg tgaagaactt ggttactggg
841 aagatctccg accttcaggt gtccggtctc ttcttcgcca tcggacatga accggcgacg
901 aagtttctcg gcgggcagct tgagctcgat gctgatgggt atgtggccac caagccaggc
961 tccacgcaca ccagtgtgaa gggggtcttt gctgctgggg atgtgcagga caagaagtat
1021 cgccaggcta ttactgccgc tggatcaggg tgcatggctg ctttggacgc ggagcactat
1081 ctgcaggagg tcggtgcaca ggagggcaag gccgattgac tatctcagga ggaagcgacc
1141 accagcgttt caagaagtcc aacgttgtcg ctgctgaaag ctacactctg aacgtttatg
1201 ccatgggctg ttctgacttc tgaatgcttc taccggattt tcctgcccct tattagcgtc
1261 gtattatttg atgtgctgga gatttatctg tatttacgct gaagacgacg tattgcttgc
1321 gggtatccgc attttctgca tttgcttatg attgagttat tgtgacattt ggcgttttta
1381 gtaccaaact agcaaggaat tgtgtattct gaagaccatt ccgatcaatg ctactgatat
1441 ggtggatatc actattgttt tcctggaaag aggagtaatt agaagttcac tagcaggttg
1501 ct
//