LOCUS AK071176 1848 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023083O08, full insert
sequence.
ACCESSION AK071176
VERSION AK071176.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1848)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1848
/clone="J023083O08"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1848
/db_xref="Osa1:LOC_Os03g49730"
/db_xref="RAP-DB:Os03g0704200"
/note="(RAP Annotation release2) Zinc finger, MYND-type
domain containing protein"
/note="(Rice Genome Annotation Project) histone-lysine
N-methyltransferase ASHR1, putative, expressed"
/note="mapping to R03-TIGRv4S1-001295R (Chr.3: short
arm=28257540, long arm=28261444, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 519 a 385 c 439 g 505 t
ORIGIN
1 ggtaggcgcc acgtcagcca aaaccgctct taaaaccacc gagggatctc atctgcaccg
61 gttttgatag ttgagggacc cgttgtgtct ggtttttcgg ttgagggacc tcaaatgaac
121 ttattccttt tttttttttc gaaccttctc gagaggagag gcgtcggggc ggggggaatg
181 gcgtcgtggg aggagcagct gcgggacgag ctcgccggcc gagacctcgc cgtcgcctcc
241 gtccccggga agggccgcgg cctcttcgcc gcacgcagct tcttcccagg agaagtcgtt
301 atttcgcaag agccttacgc ttctacacca aacaagattt ctgtgggctc caactgcgac
361 aattgtttcg cctccagaaa cctgaggaag tgctccgttt gtcgagttgc ttggtactgt
421 gggagtgcgt gtcagagaga agaatggaag cttcatcaac ttgaatgtcg agcaatcgcc
481 gcgcttacag aggatagaaa gaagatgctt actcccacaa ttcgtttgat ggtgcggctt
541 gtacttagaa gaaaactgca ggatgacaag gctattccat cttcaggaac agataactac
601 aatctagtgg atgcattaga atcccaccgc ataatataga catctccgag gttgataaaa
661 atcaactggt tttatatgct cagatggcca atcttgtcca actgattctt ccttcattcg
721 agcttgatct taaggaaatt acacatacct tttccaagtt tgcctgcaac gctcatacca
781 tatgtgatcc tgaactgagg ccccttggga ctggactata ccctgtttta tctattatta
841 accacagttg tgtaccaaat gcagttttga tatttgaagg tcggacagca tatgttcgtg
901 cattgcaacc tataagtaaa aatgaggagg tatcaataag ttacattgaa actgcggcaa
961 ccactatgaa gagacaggac gatctcaagc actactactt cacttgcaca tgtccccgtt
1021 gtgttaagga ttctgaggaa gatgcgctcc ttgagggata cagatgcaat gaccaaaagt
1081 gtgatggatt tcttctgcct aatgcaggaa acaaaggtta tacatgccag aaatgtagca
1141 cttctagaga tggggaagag ttacaaaaga tggctagcga tgtactacta ttatctgaca
1201 aagtctcttc cttagtttca tctggaatag ataacagtga ggtaggttct atgtacaaga
1261 ccattgaaga gctagagcgg aagctttacc atcctttgtc aatcactttg cttcacacac
1321 gggaaacact cttgaagata tatatggagt tacaagattg gcagactgca ttgatgtatt
1381 gcagattgac aattccagtt tatgaaagaa tttacccacc ttttcaccca atgattggat
1441 tacagttcta tacttgcgga aagcttgaat ggttgcttga gtacacagag gatgctctga
1501 tgtctttaac cagggcagca gatatacttc gcataacgca tgggactaaa tccgagttca
1561 tgaaggaact tttgggcaag ctagaagaag taagggctga agcttctttt aggctctcgg
1621 ctggagatga acaataattg agtaaccatt ttattgtgaa gctccaggtc atcgtgatgg
1681 caaatagaat gtaacaatgt tgcaacaatg ttcaaatagg atagtactaa gtagacaatc
1741 tctaaattta gaatagcttt gttaattcaa cattgggata taagctgccc tgaagggctc
1801 gcatcgggac aagaactgtg aactggtgat atggaaaatt cattgttc
//