LOCUS AK071169 2055 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023081H03, full insert
sequence.
ACCESSION AK071169
VERSION AK071169.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2055)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2055
/clone="J023081H03"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 276..1775
/db_xref="Osa1:LOC_Os04g45720"
/db_xref="RAP-DB:Os04g0540600"
/note="(RAP Annotation release2) Aldehyde dehydrogenase
NAD(P)-dependent family protein"
/note="(Rice Genome Annotation Project) aldehyde
dehydrogenase 3B1, putative, expressed"
/note="mapping to R04-TIGRv4S1-000842R (Chr.4: short
arm=26824898, long arm=26829816, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG92350.1"
/translation="MGRVAPSVEEVGGEQPPPALGPGETVSGTVAELRAAYESGRTRS
LEWRQSQLRGLLRLLAEEEAAAFRALREDLGKHQAEAYRDEIGVLVKSANAALREVGK
WMAPEKVWVPLIAFPARAQLEPQPLGVILVFSCWNVPLGLSLEPLVGALAAGNAVALK
PSELAPATAKFLGDNVGKYMDATAVKVIQGGPEVGEQLMEHRWDKVLFTGSPRIARVV
MAAAAKHLTPVALELGGKCPCIFDTIGGSARDLQTAVNRVVGGKWSSCAGQACLAIDY
VLVEERFVPVLIKALKSTLKKFFADSDHMARIVNARHFQRLSDLLKDKSVAASVLHGG
TLDAKNLCIEPTILLNPPLDSAIMTEEIFGPLLPIITVKKIEDSIAFVRARPRPLAVY
AFTKNAALRRRIVEETSSGSVTFNDAVVQYGIDSLPFGGVGESGFGQYHGKYSFEMFS
HKKAVLTRGYLIELTARYPPWDDSKISMMRQLYRYNYVGFVLTFLGLKK"
BASE COUNT 437 a 564 c 648 g 406 t
ORIGIN
1 gactttttcg gtcctagcaa ccggcagtag taccaatgat gcacctttgc accagtttac
61 aacaataatg gacgtcaatt ctactgaacc gccctggtgc cagcatttaa ttcgtatcat
121 gcattcatgc gtagcgtagg ccataggctc aagcgcacgt cagttgccat aaattggcct
181 cgccggcccg aggctttctt caactttctg cttgcaaagt ttcaatacac tggagtgagt
241 cagtgaggtt ggtgaagcag agtgaggaaa ggaggatggg aagggtggcg cctagcgtcg
301 aggaggtcgg gggcgagcag ccgccgcccg cgcttgggcc cggcgagacc gtgagcggga
361 cggtggccga gctgagggcg gcgtacgaga gcggcaggac gcggagcctg gagtggaggc
421 agtcgcagct ccgggggctc ctccggctct tggcggagga ggaggccgcc gcgttccggg
481 cgctccgcga ggacctcggc aagcaccaag ccgaggccta cagagacgag atcggcgtgc
541 ttgtcaagtc ggcgaacgcc gcgctgcgtg aggtcgggaa atggatggcg ccggagaagg
601 tctgggtgcc gctaatcgcg ttcccggcaa gggcgcagct ggagccgcag ccgctcgggg
661 tcatcctcgt cttctcttgc tggaatgtcc cgttgggcct ctctctggag cctctcgttg
721 gagcattggc ggccggcaat gcggtcgcgc tgaagccatc ggagctggcg ccggccaccg
781 ctaagttcct cggcgacaac gtcggcaaat acatggacgc cacggccgtg aaggtcatcc
841 agggcgggcc ggaggttggc gagcagctca tggaacacag atgggacaag gtccttttca
901 ccgggagccc gcgcatcgcg cgcgtcgtga tggccgcggc cgcgaagcac ctgacgcccg
961 tggcgcttga gctcggcggg aagtgcccct gcatcttcga cacgatcggc ggcagcgcgc
1021 gggacctgca gaccgcggtg aaccgcgtcg tcgggggcaa gtggtcgtcc tgcgccggcc
1081 aggcctgcct ggccatcgac tacgtcctcg tcgaggagcg cttcgtgccc gtcctgatca
1141 aggcgctcaa gtcgacgctg aagaagttct tcgccgactc ggaccacatg gcgcggatcg
1201 tcaacgcgag gcacttccag cggctgagtg accttctcaa ggacaaatcg gtcgcggcgt
1261 ccgtcctcca cgggggcaca ttggacgcca agaacctgtg catcgagccc acgattctgc
1321 tgaatccccc actcgactcc gcgatcatga cagaggagat tttcggccct ctcctgccca
1381 tcatcacggt gaagaagata gaggacagca tcgccttcgt gagagcgcgg ccgaggccgc
1441 tcgccgtcta cgcgttcacc aaaaacgccg cactgaggcg ccgaatcgtc gaggagacgt
1501 cgtcggggag cgttacgttc aacgacgcag ttgtacaata cgggatcgat tcgctgccgt
1561 tcggcggcgt cggcgagagc ggattcgggc agtaccacgg caagtactcc ttcgagatgt
1621 tcagccacaa gaaggcggtt ctgacgagag gataccttat cgagctgacg gccaggtacc
1681 cgccgtggga tgacagcaag atctccatga tgcgacagct ctaccgttac aattacgtcg
1741 gattcgtctt aaccttcctc ggtctaaaga agtgaaaatt tggtgggaag gaattggtga
1801 tcgcttttgt ggagttcaaa gtgagtgcat ttagcccaag agactactga tgagaataaa
1861 tatagactta tatcgcttag tgaataagaa caagatttgc agttgctagt ataaagcagc
1921 aaaaatgtac tgcctgcatt atataagaaa aatgcgctac ctgtaattta cgtttcgtca
1981 agaaaccacc ttttaagtaa ggtaaatgta aggtactaag gtgcaatttc agtagttttg
2041 ggttgaattt cagcc
//