LOCUS AK071036 1672 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023080P10, full insert
sequence.
ACCESSION AK071036
VERSION AK071036.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1672)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1672
/clone="J023080P10"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 114..1340
/db_xref="Osa1:LOC_Os09g12600"
/db_xref="RAP-DB:Os09g0297400"
/note="(RAP Annotation release2) Similar to
Phosphate/phosphoenolpyruvate translocator"
/note="(Rice Genome Annotation Project) triose
phosphate/phosphate translocator, non-green
plastid,chloroplast precursor, putative, expressed"
/note="mapping to R09-TIGRv4S1-000175R (Chr.9: short
arm=7221187, long arm=7224657, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG92274.1"
/translation="MQSAAAVGLLRPCGATTAAAPLQLRNPSPRGFGVGVGQPLLPPR
GLRLSAVAPRAGISARRIGLVPASPEQEDERRRGARDVAVAATAAAAGEAGAEEGGGL
AKTLQLGALFGLWYLFNIYFNIYNKQVLKVFPYPINITNVQFAVGTVIALFMWITGIL
KRPKISGAQLAAILPLAMVHTMGNLFTNMSLGKVAVSFTHTIKAMEPFFSVLLSALFL
GEMPTPFVVLSLVPIVGGVALASLTEASFNWAGFWSAMASNVTFQSRNVLSKKLMVKK
EESLDNITLFSIITVMSFFLLAPVTLLTEGVKVTPTVLQSAGLNLKQIYTRSLIAAFC
FHAYQQVSYMILARVSPVTHSVGNCVKRVVVIVTSVLFFRTPVSPINSLGTGVALAGV
FLYSQLKRLKPKPKTA"
BASE COUNT 338 a 464 c 425 g 445 t
ORIGIN
1 ggccatcctc gagcactccg ccgccgccgc cgccgccgcc tcgacgcatc cgcttccccc
61 cacgcgagcc gaagcttcta gaaccttcga ggccgcggct cccacgggcg gcaatgcaga
121 gcgcggcggc cgtcgggctc ctccggccat gcggcgccac caccgccgcc gccccgctcc
181 agctccgcaa ccctagcccc cggggcttcg gcgtcggagt cgggcagccg ctgctcccgc
241 cgagggggct ccgcctctcc gccgtggccc cgcgcgcggg catctccgcc cggcgcatcg
301 ggctcgtgcc ggcctccccg gagcaggagg atgagcggcg gcggggcgca cgcgacgtgg
361 ccgtggcggc gacagcggcg gcggcgggtg aggcaggggc ggaggagggt ggagggctcg
421 cgaagacgct gcagctcggc gcgctcttcg ggctgtggta cctcttcaac atctacttca
481 acatctacaa caagcaggtt ttgaaggttt ttccataccc cataaacatc acaaatgtcc
541 agtttgctgt cggcactgtc attgctctgt tcatgtggat taccggtatc cttaaaagac
601 caaagatctc cggtgcgcag cttgctgcta tccttcctct cgctatggtc cacaccatgg
661 gcaatctttt cacgaacatg agccttggaa aggttgcagt gtcatttaca catactatca
721 aggctatgga gcctttcttt tcagttctgc tttcagcact tttcctcgga gagatgccta
781 ctccttttgt tgtattgtct cttgttccaa ttgttggtgg tgtggcattg gcatctctta
841 ctgaagcttc atttaactgg gctggatttt ggagtgcaat ggcctcaaat gtcaccttcc
901 agtcaaggaa tgtgttgagc aagaagctta tggtgaagaa ggaggaatct ctggacaaca
961 ttaccctctt ctcaatcatt acagtgatgt cattcttcct cttggcccca gtaaccttgc
1021 taacagaggg tgtcaaagtc actccgacag ttctgcagtc tgctggtctg aacttaaaac
1081 agatatacac aaggtcactg attgctgcgt tctgtttcca tgcataccaa caggtgtcgt
1141 acatgatcct ggcaagagtg tcccctgtta ctcactcggt gggtaactgt gtcaagcgag
1201 tggtggtcat tgtgacatcc gttctgttct tccgcacccc tgtttcgcct atcaactctc
1261 tgggaaccgg agtcgctctt gccggagttt tcctgtactc acaattgaag cggcttaaac
1321 ccaagcccaa gactgcctga ttgtgtcttg gtatctatcg tgaagaaccg tagaagcatt
1381 gccacacgcc atcggaatga gtgccttagc ttagaatgat ccttggagaa gctccatcca
1441 gtgaactgat gctgctgtgt gtatcgtttg tagttgagtt actagcgtgc taatcgtggc
1501 aaggtttttg tgtcttcttt accaccttat gcttgaacag tcaattattt tgttgtatca
1561 ataaatttcg tgcaatataa cgttatatta tctctgtttc tttatggaag tattactatc
1621 cttgtattat aaattaaaaa gtaaatttca taaaactata gatatcttga tc
//