LOCUS AK070858 1917 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023068K15, full insert
sequence.
ACCESSION AK070858
VERSION AK070858.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1917)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1917
/clone="J023068K15"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 117..1571
/db_xref="Osa1:LOC_Os04g37460"
/db_xref="RAP-DB:Os04g0447400"
/note="(RAP Annotation release2) Similar to Glutamate
decarboxylase 2 (EC 4.1.1.15) (GAD 2)"
/note="(Rice Genome Annotation Project) glutamate
decarboxylase, putative, expressed"
/note="mapping to R04-TIGRv4S1-000532R (Chr.4: short
arm=22095004, long arm=22097360, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG92177.1"
/translation="MALSTAQTGESMHSSTFASRYVRTALPRFRMPEKSIPKDAAYQI
INDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNM
IAHLFNAPIGDDETAVGVGTVGSSEAIMLAGLAFKRKWQNRMKAEGKPHDKPNIVTGA
NVQVCWEKFARYFEVELKEVKLTQGYYVMNPEKAVEMVDENTICVAAILGSTLNGEFE
DVKMLNDLLTAKNAETGWNTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHK
YGLVYAGVGWVIWRNKEDLPDELIFHINYLGADQPTFTLNFSKGSNQIIAQYYQLIRL
GFEGYKDIMQNCRDNATVLREGIEKTGHFDVVSKDSGVPLVAFSLKDSSRYTVFEVAE
SLRRFGWIVPAYTMPADAEHVAVMRVVIREDFSRGLAERLITDLTKTVADMDAHAVKK
AAAEPAKKTVREIEKEVTTYWRSFVARKKSSLVC"
BASE COUNT 414 a 558 c 583 g 362 t
ORIGIN
1 gcgcgtcgtc gtcccctctc ctagctagcg gctatcaaac ccccacacca ctgctcgatc
61 gatcgtcgca gccggagtaa ctaaggcaga gatcagatca ggcgaattag gagcatatgg
121 cgctgtcgac ggcgcagaca ggggagtcga tgcactcctc gacgttcgcg tcgcggtacg
181 tgcgcacggc gctgccgagg ttcaggatgc cggagaagtc gatccccaag gacgcggcgt
241 accagatcat caacgacgag ctgatgctcg acggcaaccc gcgcctgaac ctggcgtcct
301 tcgtcaccac gtggatggag cccgagtgcg acaagctcat gatggccgcc atcaacaaga
361 actacgtcga catggatgag taccccgtca ccaccgagct ccagaaccgg tgcgtgaaca
421 tgatcgcgca tctgttcaac gcgccgatcg gggacgacga gacggcggtc ggggtgggca
481 cggtggggtc gtcggaggcc atcatgctgg cggggctggc gttcaagagg aagtggcaga
541 acaggatgaa ggccgagggg aagccccacg acaagcccaa catcgtgacg ggggccaacg
601 tgcaggtgtg ctgggagaag ttcgcgcgct acttcgaggt ggagctcaag gaggtgaagc
661 tgacccaagg gtactacgtg atgaacccgg agaaggccgt ggagatggtc gacgagaaca
721 ccatctgcgt cgccgccatc ctcggctcca ccctcaacgg cgagttcgag gacgtcaaga
781 tgctcaacga cctcctcacc gccaagaacg ccgagacagg gtggaacacg ccgatccatg
841 tggacgcggc gagcggcggg ttcatcgcgc cgttcatcta cccggagctg gagtgggact
901 tccggctgcc gctggtgaag agcatcaacg tcagcggcca caagtacggg ctcgtctacg
961 ccggcgtcgg gtgggtcatc tggcgcaaca aggaggacct ccccgatgag ctcatcttcc
1021 acatcaacta cctcggcgcc gaccagccaa ccttcacgct caacttctcc aaaggatcga
1081 accagataat tgcgcagtat taccagctca ttcgtctcgg attcgagggg tacaaggaca
1141 tcatgcagaa ctgccgggac aacgcgacgg tgctccggga ggggatcgag aagacgggcc
1201 acttcgacgt ggtgtccaag gactccggcg tgccgctggt ggccttctcc ctcaaggact
1261 cgtcgcggta cacggtgttc gaggtggccg agagcctccg ccgcttcggc tggatcgtgc
1321 cggcgtacac catgcccgcc gacgctgagc acgtcgccgt gatgcgcgtc gtcatccgcg
1381 aggacttcag ccgcggcctc gccgagcgcc tcatcaccga cctcaccaag acggtggccg
1441 atatggacgc ccacgccgtc aagaaggccg ccgccgagcc ggccaagaag accgtgcggg
1501 agatagagaa ggaggtgacc acctactggc ggagtttcgt cgccaggaag aagagcagcc
1561 tcgtctgctg atcatcgact cctgcactcg cgcgtacata aagtgcagga acgaataatt
1621 cttgacccgt cttgcattga gttcttcgtt tgctgctgct tcttttcttt tttttttcct
1681 tttcacccgc tgaattttga gttcagtttc aaattcgctt cgatagattt gtgtatgtca
1741 caccgatttg tggcattctt gcagacaagt taccaatatg aaatgcgtat aggcatgtac
1801 acgcagagac gtgtcaggca gaacagaagt gagatgcacc gatctgtacc ggccatggca
1861 tggaattggt ttgtcatggg ctatagttgg ttgacagaat aagttcattt tgtgacc
//