LOCUS AK070751 2052 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023064N17, full insert
sequence.
ACCESSION AK070751
VERSION AK070751.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2052)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2052
/clone="J023064N17"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2052
/db_xref="Osa1:LOC_Os08g19610"
/note="(Rice Genome Annotation Project) peptidyl-prolyl
cis-trans isomerase, cyclophilin-type family protein,
expressed"
/note="mapping to R08-TIGRv4S1-000413F (Chr.8: short
arm=11721928, long arm=11726695, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 536 a 522 c 410 g 584 t
ORIGIN
1 gaatcgagta tcgcgtaaaa gaagaaatct cccgtctcgt tctcgttctc ctccgctcct
61 tgcgccgccg ccaagacgag cggagggccg ggcggcgatc tccatctggc aagcagagca
121 gcggagggga ggaggggatc ctggtgcgtc ctctttctga tccatctctc tctctctctc
181 tctctctctc tcccacccca ccgggacctg gaatttgctt gcgttcgtga atttgatagc
241 cttaaacctc tcttatttca agtaataaca gtttgtttgt ttacctaaaa gttcgggggt
301 tcaaccgaac ccccatgccc caagttggat ccgcccctgg tttgaattgc tgaaacataa
361 tttcgagcta gttaaacgaa gagacaacat gcctggaaat gtaaaaaaaa agtatgctga
421 tttgaatttg attgttggaa ctgccctata ggaaactggt aaattttaga acaaaaaacc
481 ttgcttatag taaaatcgtg aatggatgat atgcaaagac atggtgagaa atattcactc
541 gctcatacta caactactta agaggaccat atttgctcac tctggaatag ctgctgacct
601 gctgtgacca tcatacaccc cctcaccgca atgcaggttc catttgaagt aatcggagaa
661 tggtatgttg agaattagat taaagcttcc attttaaaat tgtaattgtt tgggctgtca
721 gctatttgcc attattcaca agtgataatt gtgaccctac aacgaagagg ctaacagtag
781 gttttagaat ttcagtaatg ttatatctca aaagccaact attacatttg cagggaagga
841 tattagtgat tttctactgc tgtttcgtca gaaggacaag aactgaagaa ttcagttagc
901 aacagtatgg tgttgccttc atcaaatacc agggccactt cttccatggc ttaccctgtt
961 tccctgagca gcctccacca ccaccccaac aaccaccatg ctttttttct tccctcgaaa
1021 acaaaccatg ataatactca taaacctatt gaatccccta gaatttctag acggtctctc
1081 atcttcctcc ctgtcctccc ttctcttcta tacgcttcat catcccctgc cttagatgac
1141 gcaaacattc catccacctc tgccattgat accaccatca cagatcggat cttcatggac
1201 ttcagtgtct gccctagcta ctttcgctct gaccgcactt taggagctga gcttgctaca
1261 tgtcctgatt ctgaacctct tggtcgtgta atttttggtt tgtatggtcg actcctcccc
1321 ctcactactg ccaacttcaa agctgcttgc acttctgctg cataccgggg aacacttgtc
1381 cacaagctcc ttcagggcca gttcttcgtt gctggccgcc aaggtcctcg gcgtgacagg
1441 ggcgaggtcc aacctcccac cggacttgtg aggaatgctg agactattga ccctaaagca
1501 tttgaactaa agcatgcaag gcctggcacc ctctcattgt gccttggaca gaacgatgac
1561 gatgatgaca tcaagctcaa tcctaattat cacaatgttg aattcttggt taccactgga
1621 ccagggccct gcccagagct tgatggacag aacattgtct ttggaactgt attggaagga
1681 atgaatgtta taaccagcat tgcaactatt cctacctata aaccagctga aaggatccgc
1741 ttcttcaatg attttgccca gttgattggt gatgaaagag ctcaaactgc tcgagcgttg
1801 tgggatcgcc cgctaaaaac tgtttatatc agtgattgcg gagagctaaa agtgaccaaa
1861 ccatcacttt cccctccaag tctgccataa aaaaccacag aggcaatttt gtgtacctac
1921 acttattctt ctccctccaa tgtcaactgt atatatgcca tctagtatta actgacatct
1981 gctgtgtttc tggcccaaaa tgtgtacgac gggtctctga ttcatcgaag taaatatatt
2041 acagtgctgt gc
//