LOCUS AK070716 1900 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023057D05, full insert
sequence.
ACCESSION AK070716
VERSION AK070716.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1900)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1900
/clone="J023057D05"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 277..1539
/db_xref="Osa1:LOC_Os06g51290"
/db_xref="RAP-DB:Os06g0729000"
/note="(RAP Annotation release2) Phytoene synthase 1 (EC
2.5.1.32)"
/note="(Rice Genome Annotation Project) phytoene
synthase, chloroplast precursor, putative, expressed"
/note="mapping to R06-TIGRv4S1-001232R (Chr.6: short
arm=31050984, long arm=31054920, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG92106.1"
/translation="MAAITLLRSASLPGLSDALARDAAAVQHVCSSYLPNNKEKKRRW
ILCSLKYACLGVDPAPGEIARTSPVYSSLTVTPAGEAVISSEQKVYDVVLKQAALLKR
HLRPQPHTIPIVPKDLDLPRNGLKQAYHRCGEICEEYAKTFYLGTMLMTEDRRRAIWA
IYVWCRRTDELVDGPNASHITPSALDRWEKRLDDLFTGRPYDMLDAALSDTISKFPID
IQPFRDMIEGMRSDLRKTRYKNFDELYMYCYYVAGTVGLMSVPVMGIAPESKATTESV
YSAALALGIANQLTNILRDVGEDARRGRIYLPQDELAEAGLSDEDIFNGVVTNKWRSF
MKRQIKRARMFFEEAERGVTELSQASRWPVWASLLLYRQILDEIEANDYNNFTKRAYV
GKAKKLLALPVAYGRSLLMPYSLRNSQK"
BASE COUNT 496 a 484 c 486 g 434 t
ORIGIN
1 gatagccata gctcatcatc caccctctct tccttccttc cttccttcct tccacacaga
61 ccagaccagg catcccgaca ctacacgcag actctcgact ttgtcactag catcattgct
121 tgatgatcga tgctgagctg caaccaagca ccagcatatc ctttccttca ttccttcctg
181 gtgctggtag aagaagaaca agctagctag agtgataaga gctagctacc ttgcagatcg
241 atctccggcc agcgattgat cccatccagt ataataatgg cggccatcac gctcctacgt
301 tcagcgtctc ttccgggcct ctccgacgcc ctcgcccggg acgctgctgc cgtccaacat
361 gtctgctcct cctacctgcc caacaacaag gagaagaaga ggaggtggat cctctgctcg
421 ctcaagtacg cctgccttgg cgtcgaccct gccccgggcg agattgcccg gacctcgccg
481 gtgtactcca gcctcaccgt cacccctgct ggagaggccg tcatctcctc ggagcagaag
541 gtgtacgacg tcgtcctcaa gcaggcagca ttgctcaaac gccacctgcg cccacaacca
601 cacaccattc ccatcgttcc caaggacctg gacctgccaa gaaacggcct caagcaggcc
661 tatcatcgct gcggagagat ctgcgaggag tatgccaaga ccttttacct tggaactatg
721 ctcatgacgg aggaccgacg gcgcgccata tgggccatct atgtgtggtg taggaggaca
781 gatgagcttg tagatggacc aaatgcctcg cacatcacac cgtcagccct ggaccggtgg
841 gagaagaggc ttgatgatct cttcaccgga cgcccctacg acatgcttga tgctgcactt
901 tctgatacca tctccaagtt tcctatagat attcagcctt tcagggacat gatagaaggg
961 atgcggtcag acctcagaaa gactagatac aagaacttcg acgagctcta catgtactgc
1021 tactatgttg ctggaactgt ggggctaatg agtgttcctg tgatgggtat tgcacccgag
1081 tcgaaggcaa caactgaaag tgtgtacagt gctgctttgg ctctcggcat tgcaaaccag
1141 ctcacaaata tactccgtga cgttggagag gacgcgagaa gagggaggat atatttacca
1201 caagatgaac ttgcagaggc agggctctct gatgaggaca tcttcaatgg cgttgtgact
1261 aacaaatgga gaagcttcat gaagagacag atcaagagag ctaggatgtt ttttgaggag
1321 gcagagagag gggtgaccga gctcagccag gcaagccggt ggccggtctg ggcgtctctg
1381 ttgttatacc ggcaaatcct tgacgagata gaagcaaacg attacaacaa cttcacaaag
1441 agggcgtacg ttgggaaggc gaagaaattg ctagcgcttc cagttgcata tggtagatca
1501 ttgctgatgc cctactcact gagaaatagc cagaagtagg aggcgggaag aggagataaa
1561 gggaagatga tgagcaggtt aggcttagat aggaaaaatc agacagcatc tgccttccga
1621 ttaatgttga ggaaattata ttattgtgtg tatcatacat agcatgtata gggaaaatgc
1681 tgcaggcagg caggcaggct aggtgatggt tgaatatttc cttcacatca tgtatgtata
1741 tccttccttg atgctacagc acatatgtat gtatgactct gaagaaagag caacctgtat
1801 agtagctaac cggctatggc ctatgtatgg gccgcagagg tgagcaaaca aaaatcatca
1861 tccatggatt gattgattga ttgattgata cagtactacc
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