LOCUS AK070691 2343 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023058J05, full insert
sequence.
ACCESSION AK070691
VERSION AK070691.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2343)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2343
/clone="J023058J05"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2343
/db_xref="Osa1:LOC_Os02g02450"
/db_xref="RAP-DB:Os02g0116300"
/note="(RAP Annotation release2) Oligopeptide transporter
OPT superfamily protein"
/note="(Rice Genome Annotation Project) transposon
protein, putative, unclassified, expressed"
/note="mapping to R02-TIGRv4S1-000054F (Chr.2: short
arm=862272, long arm=864882, direction=forward) for TIGR
Pseudomol ver4"
BASE COUNT 487 a 678 c 618 g 560 t
ORIGIN
1 gcttgctgcc agcattttga ttctgtgtgt gtgtcttggt tgcaaaaacc aagacataca
61 cacagaatca aataataaca aaggtttcct agcctcaaag gatacatata tatagtttcc
121 ctacaataca atggagcctg tcaatgattt ccaggaaggc atttcaacag agcatgcctt
181 tgaggcagag cctgtgccat cattgtcgga aacaataacg ccacgatcaa tggtggtgag
241 cttcatcctt agtgtaactc tcagcatcgt cgccatgaag gtcaccttga gctctggctt
301 cattccgtcg ttcagcatcc cagccggcct cctcggtttt tgtgtatccc gtgcgtcgat
361 ccgcattctt gactacttcg cagtggcaca actaccattc acacgccaag agaacaccat
421 catccagacc tgtgtcgtcg catgcacctc gatcacattc accggtggct ttgggacata
481 tattcttgca atgggaaaga aagcagctgt aggggatgtc aatgcccaaa ataacgttga
541 ggagccaagc tttgccagga tgatcacctt cctcttcctt atcagctttg ctggcatgtt
601 catcatcatg cccttcagga aggtcatgat cattaggcac gggttgacat tccccagcgg
661 cacagcaacg gcgcacctca tcaatagctt ccatacacct caaggtgtca agcaagcaag
721 gaagcaagtg acattattgt ttaaatcgtt tggaggaacc atcgcatggt cgctcttcca
781 gtggttcttc gcctctgggc cgggctgtgg cttcaaattc ttccccacat ttggcctcga
841 ggcatataaa cacggattct tcttcgattt caccatggcc aatgtcggca ttggcatgat
901 gtgcccgtac atgatcgtgt tctccgtttt cattggcacc atcatctcgt gcggtgtaat
961 ttggccgtac atcgagtcaa aggagggcat ctggtaccca agcaaccttg ggcccaacag
1021 ccttaacggc atcagaggtt acaaggtgtt catcggcttg tccatgataa tggctgactg
1081 cctcttcgtc ttcctctgca tcatggtccg gacaacatgt gccatgatca agcggcgtcg
1141 gcaggcaatg caaggtggtg gcggtaatgc gcagccattc cagggtatcg acatcgccga
1201 tcagccggtg aagagcttcg atgatcgccg cagggcgcag gtgttcctcc gggacgagat
1261 accggactcg gtcaccattg gctgctatgt cctcctgtcg atcatctcca tcgccgccat
1321 ccctcacctc tacccacaga tgaggtacag ccatgttgcg ctcatctacc tcgccgcgcc
1381 cgtcttcgcc ttctgcaacg cctacggctt cggcgtcacc gacatgaacc tggctagcac
1441 ctattgcaag atcgccatgt tcgcgttcgg ctcgtgggtc ggcatcaaga gcggcggcgt
1501 ggtcgccgcc ctggtcgccg gcgggatcac catgtcgatc ctgggcaacg cggccgacgt
1561 cgcgcaggac ctcaagacgg gctacctgac gctgacgtcg ccgcgcgccg tgttcatcag
1621 cgaggcgatc ggcacggcgc tgggatgcgt cgtcaacccc accgtgttct gggtgttcta
1681 cagggtgtac aagatgggca gcggcgacat gggcgacatg ccctacgcca agctctaccg
1741 cggcttcgcc atgctcagcg tcggcgacgg cgagcaaggc ctgcccaggc acagcatgct
1801 cctcttcaag gtcttcttcg tgctcgccct ggcgctcagc gtgttccggg aggtggcgag
1861 ccggaaggag tggcgcatcc ggcgctacat cccgagcacc atcggcatgg ccatcacctt
1921 cttcatgccg ccgcgcgtgc ccgtcggcat gtgcatcggc agcctggtgg cgtacctgtg
1981 ggagaagatg gacgccggcc gcgggcggat gctctcgccg gcgctggcgt cggggctcat
2041 ctgcggcgac ggcgtcggct cgatcttgct gtccatgctg acactcatgg gtgccagggc
2101 gcccatctgc atcaagttct tgtctcgagg tgacaatgtc aagttggacg ccttcttggc
2161 aacactccat gacatgagat agctactagc tagctatcca tgtagggaaa ctagatcatt
2221 ttctcaggtg tcaaaacttt tgtacatatg tatccacgtc ataggggctt gagttaggag
2281 tcgtggcaaa ctgtataatc aagtttcagt tcagtctata aacacagttt gatctcctct
2341 acc
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