LOCUS AK070682 1913 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J023062B02, full insert sequence. ACCESSION AK070682 VERSION AK070682.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1913) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1913 /clone="J023062B02" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 247..1368 /db_xref="Osa1:LOC_Os09g38130" /db_xref="RAP-DB:Os09g0554300" /note="(RAP Annotation release2) Auxin Efflux Carrier family protein" /note="(Rice Genome Annotation Project) auxin Efflux Carrier family protein, expressed" /note="mapping to R09-TIGRv4S1-000748F (Chr.9: short arm=21963172, long arm=21967738, direction=forward) for TIGR Pseudomol ver4" /protein_id="BAG92093.1" /translation="MFASLAKTVTLSDVISWWFMPVNIGITFIVGGTLGWIACKILKP PQHFRGMIIAFCSAGNLGNLLLIIVPAVCDEDGNPFGKDRSLCRSRGLSYSSLSMALG GLFIWTHTYSLMQKAGKMYHKMQSKSIQCPADSDEEHHPAQGHDQVKLDGETAYADEE AALLVSAKLAPEHNEENQMEAPLLTCEREIANKGGFWTNLKETVHQVVEELMAPPTVS AILGFVVGLVPWLKSLVIGNGAPLRVIQESLQLMGNGTIPCITLILGGNLTQGLRKSV LKRTVIITIVCIRYVIQPLIGMAVVHAAYGVGFLPHDPLYRYVLMMQFALPPAMNIGT MAQLFDVGQEECSVIFLWTYLIAAIALTTWSTIFMSILS" BASE COUNT 509 a 433 c 413 g 558 t ORIGIN 1 gattacccaa cctcaagcta gctagctctc caccgtctgc gcccattcag aaaaggagag 61 tttaatccaa catcagaaaa gatgggcttc ttgtcattgc ttcttgtggc ttctatgcca 121 atcgttcagg tcctactcat aggtgttatt ggagcttttc tcgcttctgg ttacagcaaa 181 attctaacct caagcgctct aagggatatg aacaaggttg ttttcactgt cttcacacca 241 tccctgatgt ttgctagcct ggctaagacg gtcacacttt ctgacgtcat ttcttggtgg 301 tttatgccag ttaatatagg aatcacattc attgttggtg gcactctagg ctggatagca 361 tgtaaaatac tgaaaccacc acagcatttc cgaggaatga tcattgcctt ctgttcagca 421 ggaaatcttg gcaacttgct cttgatcatt gttccagcag tctgtgacga agacggcaac 481 ccgttcggaa aagaccggag cctttgccgc tctcgtgggc tctcctactc atcattatcc 541 atggctcttg gtggcttatt catatggaca catacataca gcctcatgca gaaggcaggc 601 aaaatgtacc acaagatgca gtccaaaagc atccagtgcc cggccgacag cgatgaagag 661 catcatcctg cacaaggtca tgatcaagta aaattagacg gtgaaactgc ttacgctgat 721 gaggaggcgg ctcttctggt gtcagctaaa ctggctcctg aacacaatga agagaaccaa 781 atggaagctc cacttctgac ttgcgagaga gagattgcta acaaaggagg attctggaca 841 aacctgaagg aaaccgtcca ccaggttgtc gaggagctga tggcaccacc aactgtatct 901 gcaatacttg gatttgttgt tggcctagtc ccatggttga aatctcttgt catcggcaat 961 ggcgccccac tgagagtcat ccaggagtcc ctccaactaa tgggcaatgg cacgattcct 1021 tgcatcaccc taatcctagg ggggaatctg acacaagggc tacggaagtc ggtgctgaag 1081 cgtacggtga tcatcacgat cgtctgcata cgctacgtga tccaaccctt gatcgggatg 1141 gcggttgtcc atgctgccta tggggttgga ttcttgccac acgatccatt gtaccgctac 1201 gtgctgatga tgcagttcgc gctgccacct gcaatgaaca tcggaaccat ggctcagctg 1261 tttgatgttg gtcaagagga atgctcagtg atcttcttgt ggacttacct gattgctgcc 1321 attgcactca cgacgtggtc gacgatattc atgtccatcc tgtcttgagg ttgagggtga 1381 caagaagaac caactttgtg gcaatattgg tttagctgga atgattcagc tcacggataa 1441 aatgtaaaga agccggagac aatgagcctc tccgaaagag ccgaaactga ggcttgccca 1501 tgagcaccac acgtccacac gtgtatagaa attgaagcag tattttttta gataatgaaa 1561 aatagcatgg tggcccgcgt agataactat aattttttta acatattaaa aaatattttt 1621 atttttttca gttatttcaa aattgtattt tttatatgga ctctatactc tactcccaat 1681 catcctcact ttattaaatt tctaattttg tagttcgaaa ttttgttatt tctaaattat 1741 actcttctta tatggactta atagtctatc gtcttctcta aatattcttt ttttatttga 1801 aattttactt atttctaaac tgtactccta tatggactta gactggtgta acgcacatca 1861 gtcgtggcgt tggtaggaaa tacttaacaa ttcaataaaa accctaattt tcg //