LOCUS AK070644 2146 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023062F11, full insert
sequence.
ACCESSION AK070644
VERSION AK070644.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2146)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2146
/clone="J023062F11"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 61..1809
/db_xref="Osa1:LOC_Os05g50120"
/db_xref="RAP-DB:Os05g0576800"
/note="(RAP Annotation release2) Similar to Blast and
wounding induced mitogen-activated protein kinase"
/note="(Rice Genome Annotation Project) OsMPK21-1 -
putative MAPK based on amino acid sequence homology,
expressed"
/note="mapping to R05-TIGRv4S1-001119F (Chr.5: short
arm=28637740, long arm=28643220, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG92074.1"
/translation="MGGRARSILRWLRHHRSRRVSSSSFHLTTTGDDTVKDLHDPRRE
DAEGDGWEEVHEGPESDPEEYIALVSEDAGTHLPVRTEPRRMDPSKKEPDFFTEYGEA
NRYKVSEVIGKGSYGVVAAAVDTQTGERVAIKKINDVFDHVSDATRILREIKLLRLLR
HPDIVEIKHIMLPPSRREFRDIYVIFELMESDLHQVIKANDDLTPEHHQFFLYQLLRG
MKYIHAASVFHRDLKPKNILANADCKLKVCDFGLARVSFNDTPSAIFWTDYVATRWYR
APELCGSFFSKYTPAIDIWSVGCIFAELLTGKPLFPGKNVVHQLDLMTDLLGTPSAES
LAKIRNEKARRYLSNMRKKPRVPFTKKFPGVDPMALHLLERLLAFDPKDRPSAEEALT
DPYFNGLANSEREPIAQPISKLEFEFEKRKLAKDDVRELIYREILEYHPHMLQEYLRG
GDQMSFMYPSGVDRFKRQFAHLEEGVSKGEKSSPQLRQNASLPRERAIGNKHGDDEYH
AKLNVGEKPCHASVTDGISKPLMSARSLLKSESISASKCIGEKPKQDRDQEDSLTESM
DETADEVSEKVAQLKT"
BASE COUNT 570 a 515 c 536 g 525 t
ORIGIN
1 ggcgcgcgcg gcgcgcgcgg cgtccccgat gctcgaccac caccgcacga gggccggttt
61 atgggcggcc gcgcccgctc catcctacgc tggctccgtc accaccgctc ccgccgcgtc
121 tcctcctctt ccttccatct gaccaccacc ggtgacgaca ccgtcaagga tctccacgac
181 ccgcggcgag aggacgcgga gggcgacggg tgggaggagg tccacgaggg ccccgagtcc
241 gaccccgagg agtacattgc gttggtgtcg gaggacgcgg gcacgcacct gccggtgcgc
301 acggagccgc gacgcatgga tccgagcaag aaggaacctg acttcttcac tgaatatggt
361 gaagcaaacc ggtataaagt cagtgaagtc attggcaaag ggagttatgg tgttgtggct
421 gccgctgtcg acacccagac cggcgagcga gtggcgatca agaagatcaa tgatgttttc
481 gatcatgtct ctgatgccac ccgcatcctt agggagatta agttgctccg gttgctgcgt
541 cacccagaca tagttgagat caagcacata atgcttcctc cttcaaggag ggaattcagg
601 gacatttatg taatctttga gctaatggag tcagatctcc atcaggtaat aaaagcaaat
661 gatgatctca caccagagca tcaccagttt ttcttgtatc agctgctccg gggaatgaag
721 tacattcatg cagcaagtgt tttccatcgg gatcttaagc ccaagaatat tctagctaat
781 gctgattgca agctgaaggt ttgcgatttc ggccttgccc gagtgtcatt taacgatacc
841 ccatcagcca tattctggac ggattatgtg gcaactagat ggtatcgtgc cccagagttg
901 tgtggctcct ttttttcaaa gtacacccct gcaattgata tttggagtgt aggatgtata
961 tttgcagagc tgcttacagg aaagccactc tttccaggga aaaatgttgt gcatcaattg
1021 gatctcatga ctgatctact tggcactcct tcagcagaat cccttgctaa gatacggaat
1081 gagaaagctc gacgatacct gagcaacatg aggaaaaagc ctcgggttcc ttttactaaa
1141 aaatttccag gtgtggatcc tatggctctc catttgcttg aacgccttct tgcttttgat
1201 cccaaagatc gtccaagtgc agaagaggcc ctgacagacc cctactttaa tgggctagca
1261 aactctgaac gcgaaccaat agcacagcct atctcaaagc ttgagtttga gttcgagaag
1321 aggaaattgg ccaaagatga tgtccgggaa ttaatttacc gagagatttt agagtatcat
1381 ccccatatgc tgcaagaata tttgcgcggg ggagaccaga tgagtttcat gtatcctagt
1441 ggggtggatc gcttcaagcg tcaattcgct catttggagg aaggagtttc aaagggtgaa
1501 aaatccagtc cacagcttcg gcagaatgct tccttaccaa gggaaagagc aattggtaac
1561 aagcatggag atgacgagta ccacgcaaag ctgaatgtag gcgagaagcc atgccatgca
1621 tcagtgacag acggcattag caaaccgctc atgagtgctc ggagcttgtt gaagagtgaa
1681 agcataagcg cttccaagtg tattggtgaa aaaccaaagc aagacagaga tcaggaggat
1741 tcccttacag agagcatgga cgaaacagct gatgaggtct cagaaaaggt tgctcaactg
1801 aaaacctgat gattcccgtc aaggtcacag aatcgatcgg agttagtaca acagcatgtg
1861 tatagatgcc cttccccaga agacgagaat cccagatcag gacggtctta accatgataa
1921 agagtctaca actaataata ccacaagttg ttttggtaac ctctgttgta ctgtaaattt
1981 ttcccccttc agttttgtgt tttgacagca aacaactgtc taactgactg gttagttcct
2041 cgtcttttcc tcgatgggac aatcaccgat cctgtaaaat ttcctttctt ttgatgacag
2101 aatcatacac tgtttctatg atatattcta aaattttgca gtcaat
//