LOCUS AK070603 2310 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023059D06, full insert
sequence.
ACCESSION AK070603
VERSION AK070603.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2310)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2310
/clone="J023059D06"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2310
/db_xref="Osa1:LOC_Os02g01280"
/db_xref="RAP-DB:Os02g0102900"
/note="(RAP Annotation release2) Similar to RuBisCO
subunit binding-protein beta subunit, chloroplast (60 kDa
chaperonin beta subunit) (CPN-60 beta) (Fragment)"
/note="(Rice Genome Annotation Project) ruBisCO large
subunit-binding protein subunit beta, chloroplast
precursor, putative, expressed"
/note="mapping to R02-TIGRv4S1-000014F (Chr.2: short
arm=158661, long arm=163728, direction=forward) for TIGR
Pseudomol ver4"
BASE COUNT 679 a 395 c 627 g 609 t
ORIGIN
1 gattgattga gcagccggcg gcggcgatct ttgcttaaac cctaatctca gacgctgcct
61 ttgagagagg agagggggga gatcttcttc ttcgcttacg gcgggtgcag acaatatggc
121 ctcagcattc gggagcacct cagcatgtgg catcaagatc actcctaccg cttttgccac
181 caagaaacat ctttgcctgg ttccaccccc agtcgtttca cttccccgga aaaataggcc
241 tcagaggaag tgtaatttca gagtaaatgc tgccaaagag ttatatttca acaaggatgg
301 gttggctatc aagaagctgc aaaatggagt caataagctt gctgatctcg ttggagtcac
361 ccttggtcca aaaggacgga atgttgtcct tgagagcaag tatggatcac ctaaaattgt
421 caatgatggt gttaccgttg caaaggaggt tgagctggag gaccctgttg aaaatattgg
481 agccaaatta gtccggcaag ctgcagccaa gacaaatgat ttggctggtg atgggacaac
541 gacttctgtt gtccttgctc aagggatgat cacagagggt gttaaggttg tggctgctgg
601 tgctaatcca gtacagatta cccgtggtat agagaaaacg accaaagcac ttgtgagtga
661 actccaaaaa atgtccaagg aggttgaaga cagcgaactt gctgatgttg ctgcggtaag
721 tgctggaaat aactacgaaa ttggcaacat gatagctgaa gctatgaaca aggttggacg
781 acagggggtg gtcacacttg aagaaggaaa gagtgctgaa aataatctct atgttgttga
841 gggaatgcaa tttgatcgcg gctatatttc tccctacttt gtaactgaca gtgaaaaaat
901 gtcagtggag tatgagaatt gcaagttgct ccttgtggac aagaaaatca acaatgccag
961 agatcttata acaattctgg aggatgctat taggggtggg tacccaatcc taatagttac
1021 ggaggatatt gagcaggaag ctcttgcaac tcttgtggtc aacaggctta ggggtgcatt
1081 gaagattgct gctattaaag ctcctggttt tggagaacgc aagagtcaat accttgatga
1141 tattgctact cttactggag gtactgtcat cagggaagaa gttggcttgt ccctagacaa
1201 agctgataga gatgttctag gaacggccgc caaggttgta gttaccaagg attcaacaac
1261 aatagttggg gatggtacta cccaggacga agtaaacaaa agggtgacac aaatcaagaa
1321 ccagattgag gttgctgaac aggaatatga gaaagaaaaa ctgaatgaga gaatagctaa
1381 gctctctggt ggtgttgctg tcaaccaggt aggagcacag acagaaactg agcttaagga
1441 aaagaaactg agggttgaag atgcactgaa tgcaaccaag gcggctgttg aggaaggtat
1501 tgttgttgga ggtggctgta cgcttttgcg gcttgcatca aaagttgatg ccattataga
1561 aacacttgag aatgatgaac agaaggttgg ggctgaaatc gtaaggaagt ccttgagtta
1621 cccacttaaa ttaatagcaa aaaatgctgg tgttaacggc agtgttgtta ctgagaaggt
1681 ccttgccaat gataacttca ggtatggtta caatgccgct acaggaaaat atgaggattt
1741 gatggctgct ggtattattg atcccaccaa ggtggtgaga tgttgcttgg agcatgctgc
1801 gtcggtggcg aaaacattca tcacatcaga tgctgttgtg gtggacatca aggagcctga
1861 gaaagcagct gctgctggga acccaatggg tggatcaggt tttggatttt agtttagaag
1921 aagaggagta ccctttttgg cagttggcaa ccatttttac actggaggca ggcagaattt
1981 cacagttgca tctgagacgt tttttctttt cctgtgtgta attgttgcgt acgtcaatgt
2041 ggcagatgag aggagtagta ggttatgaat ggccagcatt atgacagttt attgttgctc
2101 gaccttacag aagagctgaa acagtgcaac ataatgtttt taaggttgag aattatgcaa
2161 gctgaagtag ttggtaataa ccgggtgagg attgtgttgt cgttggagta gatgatgatt
2221 ttactagcta gttagatcga gttacaaaca tataattaat taattaaggg ggcattggca
2281 gattacaata ataaataaat tatttacatg
//