LOCUS AK070525 3482 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023061E16, full insert
sequence.
ACCESSION AK070525
VERSION AK070525.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3482)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3482
/clone="J023061E16"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 1059..2624
/db_xref="Osa1:LOC_Os01g01380"
/db_xref="RAP-DB:Os01g0103700"
/note="(RAP Annotation release2) Conserved hypothetical
protein"
/note="(Rice Genome Annotation Project) expressed protein"
/note="mapping to R01-TIGRv4S1-000022F (Chr.1: short
arm=187838, long arm=193089, direction=forward) for TIGR
Pseudomol ver4"
/protein_id="BAG92010.1"
/translation="MASHMGADFDKLKFDPTEFSSKKEVFIVRNIILSTLKFANTCHN
MLSKTPGASCNLYDRIKELIECVQQNASQYCSTYEFFHLIMCACISWYACKTRDGNQE
SGDPTEQPDIFSSPSIWLTQELCAIRITKMLFRKQRYWDAYMSAMYCCREGLWFVVSF
VFRKLADDFGSGSFSFWFKSLLLISAGEIEMKLLLFPSAIIKLVSELKTDCDLHESFY
CVETNVDSSLAGSSELHGSQAKITDICSKTFLATDHLLSNTSSSHELFFQRWFISLRA
SFLEILADFLGILTAHLTDQRDESHHDAIGDHSSVPREHNNSQLLALVNCSLRLSELA
HSYDLLAVSHGDMDRQSFSSIARLAFMCSLLAFCIAFSVDFSKVHSSVESCRLPERFS
HASVVQDLHERVDRTDSQIVSQLQQLMPICCDKVHSIQIVTRMNCELFRYSGKGFLSS
LQICCGIFPPLTWGHQRNSDWRGQCISFAWRDAISVQHFTEGYGIAICSTQILLQSKV
TYACCSLKISCCG"
BASE COUNT 950 a 655 c 775 g 1102 t
ORIGIN
1 gaagtagaaa gaaacacaag aagaagaaga agggttaccg gcgggcggcg gcggccatgg
61 ccatgcaatg gagcatcgac ctcgacaggg ctctccgctc ccgccacccc accccggtca
121 gtactggtca acgcggcatt gtttgcggct ggctgttttt aggctatcag tggatttctc
181 ttacattaca cttgaagcac ttccaaggtt ggaaagcaga tcgttctggg cacgttggaa
241 gataatttca aagctgacat gctcttgtca ctctcaagat tggcatccaa gtcagttctt
301 ctgtttggcg atcaggtgga attgctgtta ttgttcctgg agcatgaatc ttctcattgc
361 atgaagaccg tgtcattgaa atgtttatgt tttatgtttc acggaagcat ctgccatttt
421 cctgttttaa ggactgtttt tggaacgtta ttacagctaa ttgatgatga tgatttccca
481 cttgattgta agagagatgc atttacggtt cttcaaaaga tagtctgtgg caaagctcca
541 attgttcatt ttgtcgatac ttctgagcta tctaagcttg ttctggctgc tgagagttct
601 ttgcattctt cttcctggga gatgcaagga aggttcatca ttgacttaca atgggtgtca
661 agggattacc agcaacttcc tgtcaactca tgtagaaaat gatgaggaca aattcgtgca
721 taagattgta acatcaatgg tgaatcataa tatatctctg gtcaatcaaa taataagcac
781 tggaaacaag gaagcaacaa ggagacatac ttatatgtcc tctgaattca agatgtacag
841 atctatgtta agcagtatgc taaaacttct tgtgtgctac cccttctgct gctgctgttg
901 ctcttgataa actaagaggc ctgataaaag aactagcccg actagatgac agtgattgct
961 ccaaagtttc tgttgccaat gttgaatcat ttcaaacata ttctgcccgt gaagtacttg
1021 gcacttcaaa tgatattaag ccagagactg ctagtgtgat ggcttctcac atgggagcag
1081 attttgataa gttaaaattc gacccaactg aatttagtag caagaaggaa gtatttatag
1141 tgcgtaatat aattctttcg acactcaagt ttgcaaatac ttgtcataat atgctttcta
1201 aaactcctgg tgctagctgc aatctttatg atagaatcaa ggagctgatt gagtgtgtgc
1261 agcagaatgc ttctcagtat tgtagcacat acgaattttt ccatctgata atgtgtgctt
1321 gtatttcatg gtatgcttgt aaaactagag atggcaatca agaatcaggt gatccaacag
1381 aacagcctga catattctct agtccttcta tttggttaac tcaggagctc tgtgcgattc
1441 ggataacaaa aatgcttttc agaaagcaga ggtattggga tgcctatatg tctgctatgt
1501 actgttgtcg tgaaggcctc tggtttgtgg tgtcgtttgt ctttagaaaa cttgcagatg
1561 attttgggtc aggctctttc agtttttggt tcaaatcatt gctgcttatt tcagctggag
1621 aaattgagat gaagctactg cttttccctt cagcaatcat taagttggtc agtgagctta
1681 aaacagattg cgatcttcat gagagttttt actgtgttga aacaaatgtt gacagtagtc
1741 ttgctggctc ttcagagttg catggttccc aagcaaagat tactgatatt tgcagcaaaa
1801 cattcttagc tactgatcac ctcttatcga atacctcttc aagtcatgag ctgtttttcc
1861 agaggtggtt tattagtctc agggcatcgt ttcttgagat cctagcagat tttcttggta
1921 tccttactgc acatttaact gatcagagag atgaatctca tcatgatgct attggagacc
1981 attccagtgt acctagagag cataataaca gccaattact tgctttggtg aattgttcat
2041 tacgattaag tgaactggca catagttatg atctacttgc tgtatcccat ggggacatgg
2101 atcgccaaag tttttctagc atagccaggc ttgctttcat gtgctcactt ctggcatttt
2161 gtattgcatt ttctgtggat ttctcaaagg tacatagtag tgtggagtct tgcaggcttc
2221 cagagaggtt ttctcacgct tcagttgtac aagatttaca tgaaagagtg gataggactg
2281 atagccaaat tgtttcacaa ctgcaacaat taatgcccat ttgttgtgat aaagtgcact
2341 ccatacagat tgtcacaaga atgaattgtg aattgttcag gtattctgga aaaggattct
2401 tatcgtcttt gcaaatttgc tgtggcatat ttcctccgct tacgtgggga caccaaagga
2461 atagcgactg gagaggacag tgtatctcct ttgcatggag ggatgcaatt tctgtccagc
2521 attttacaga gggttatgga attgccattt gttctaccca aatacttctt cagagtaagg
2581 taacgtatgc gtgttgttct cttaaaatta gttgttgtgg atgagaagtt caccatgctg
2641 gatcacttaa tttttttttc acaagccaca tgtgcctatt taatacatag atgatcgcag
2701 agttttattt tatgtatatc tcactattcc tctctgaaat ttgtgtttca gtaatgcatc
2761 gctcgaatag atatctgtaa taatggttag cttgtttact atatatcttg caggccttgc
2821 tttggtgctg aacttcatat atatgattca aatccagaaa acagagacgg gatatcagta
2881 ccaagtggcc tccagctttc cctaaccctt tgcttgcagt ggaaatgtgt gttaggagta
2941 acattgatat ctcgaagcta ctcgaagcta tactgcgttt tagctgcaag ctcagcatcc
3001 tgctgcttag atgcaacagg aacaagaagc aaagagtttg agatacacaa gaaaactgct
3061 ggaatggttg gtcttaatac caagctgatg cagtacatag aggatgattt gagaaagaag
3121 agggagaaga agaggaaaaa ggtccgtgtg gaggagaagg aaatggtgac agcatttgcg
3181 cgtttcgaag caagtgacag tgggatggga ttctctagct acctgctgga tgtgtctgaa
3241 tttcctcaag gttcatacaa gatgaagtgg catgcgtgct gcatcgacaa agatggcgcc
3301 tattatagct tgctgcctct caacgacggc gcagccttct ccgttcgcaa gtcttgacag
3361 ccttagacat ctcttgttaa cttataatcg tcgcaactag attactagac tagtgttttt
3421 gtatttagag acaaacaaat tgcattacaa caagacttgt tagtagcata tgtttcatgc
3481 tg
//